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8 protocols using thp 1

1

Characterization of Human AML Cell Lines

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Human AML cell lines were purchased from ATCC (Kasumi-1, Mv-411, AML193, HL-60) or DSMZ (U937, OCI-AML3) all in 2017–2018. THP-1 and HEK-Blue-ISG-KO-STING were purchased from Invivogen in 2017–2018. Upon receipt, cells were expanded to make original cryopreserved stocks with each subsequent experiment using a new original stock. Human AML cell lines were cultured either in complete RPMI (10% FBS, 100 U/mL penicillin, 100 mg/mL streptomycin sulfate, and 2 mmol/L l-glutamine) or as described in suppliers’ guidelines. THP-1 and HEK-Blue-ISG-KO-STING cells were cultured according to manufacturer's instructions (Invivogen). All cell lines were monitored for cell line authenticity at the MD Anderson Cancer Center in-house core using the Cytogenetics and short tandem repeat sequencing to assess for characteristics chromosomal/mutational status of respective cells lines. Cell lines were routinely tested for Mycoplasma at the MD Anderson Cancer Center in-house core using Lonza MycoAlert Kit. Cryopreserved primary bone marrow aspirates from patients with AML treated at MD Anderson Cancer Center were received as a gift from Drs. Gheath Al-Atrash and Jeffrey Molldrem.
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2

Monocytic Cell Line Glucose Stimulation

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U937 (ATCC, USA) and THP-1 (InvivoGen, USA) monocytic cell lines were grown in RPMI 1640 (Gibco, USA) supplemented with 10% FBS, 2 mM l-glutamine, and 100 U/mL of penicillin and streptomycin. In HG experiments, before HG stimulation, the cells were cultured in RPMI 1640 with 5.5 mM glucose for 48 h, and then were changed to 10, 20, or 30 mM glucose RPMI 1640 for indicated time points. 30 mM mannitol was used as an osmotic control. For the experiments using chemical inhibitors, Cs A, FK506, and U18666A were pre-treated for 24 h, while TG was pre-treated for 45 min. EGTA and BAPTA-AM were treated in the presence of HG stimulation. For the immunoblotting experiments measuring TFEB translocation by calcium inducers, GPN, H2O2, ionomycin, NAADP, and TG were stimulated for 20 min. The supernatants from U937 and THP-1 cells were collected for the detection of human IL-1β levels by ELISA (eBioscience, USA).
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3

Isolation of Murine Bone Marrow Cells

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C57BL/6 mice of 6–8 weeks of age were euthanized by cervical dislocation. Animal experiments were performed in accordance with standard ethical guidelines and approved by the regional laboratory animal ethics committee in Malmö/Lund (Permit No. M36-13). Femoral and tibial bones were dissected. Skin and excess muscle tissue were removed. Femur and tibia were separated by a cut at the knee joint and bone marrow was flushed with 10 ml of phosphate-buffered saline (PBS; Life Technologies, Carlsbad, CA, USA) supplemented with 2% heat-inactivated fetal bovine serum (HI-FBS; Life Technologies, Carlsbad, CA, USA). Bone marrow was passed through 70 µm nylon cell strainer (Fisher Scientific, Lund, Sweden), centrifuged and resuspended and incubated in ammonium-sodium-chloride lysis buffer (ACK; Life Technologies, Carlsbad, CA, USA) for 5 min to lyse red blood cells. Cells were then washed with PBS with 2% HI-FBS, centrifuged and resuspended in RPMI 1640 culture medium supplemented with 10% HI-FBS and 1% penicillin-streptomycin.
For additional experiments, the human monocytic leukemia cell line THP-1 (InvivoGen, San Diego, CA, USA) was cultured in RPMI 1640 culture medium supplemented with 10% HI-FBS and 1% penicillin-streptomycin.
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4

Flagellin Enhances Monocyte Cytokine Response

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The human monocytic cell lines THP-1 and THP-1-NLRC4 (Invivogen), stably overexpressing NLRC4 and naturally expressing TLR5 (23 (link)) were cultured in RPMI containing 10% FCS. Cells were stimulated with 4 TCID50/cell of rMVA, rMVA-flagellin overnight. Viruses were heat-inactivated for 10mins in a 70°C water-bath, and THP-1 and THP-1-NLRC4 cells stimulated with 4 TCID50/cell of rMVA, rMVA-flagellin overnight. The supernatant was collected and measured for cytokine production using the Luminex.
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5

Cell Culture Protocols for Immunofluorescence

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HEK293T, HeLa, THP1 and THP1-blue (InvivoGen, France) cells were cultured as described in in [37] (link). For immunofluorescence, a HeLa line stably expressing EGFP-tagged NOD1 was generated. All cell lines were continuously tested for absence of mycoplasma contamination by PCR. Primary human dermal fibroblasts were obtained as previously described [38] (link).
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6

Cell Culture Protocols for Cell Lines

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HT1080 (American Type Culture Collection [ATCC]) (fibroblast), HEK293T (ECACC) (epithelial-like), A549 (ATCC), and TZM-GFP (4 (link)) (epithelial) were grown in Dulbecco’s modified Eagle medium containing 10% heat-inactivated fetal bovine serum (FBS) (US Origin) with 2 mM l-GlutaMAX. THP-1 (ATCC), THP-1SER5−/−, THP-1 Dual (Invivogen) (monocyte), Jurkat E6.1 (ATCC), Jurkat TAg (4 (link)), Jurkat TAgSER5−/− (4 (link)), JurkatSER3/5−/− (17 (link)), K562 (National Centre for Cell Science [NCCS]) (lymphoblast) were grown in RPMI 1640 containing 10% heat-inactivated FBS (US Origin) with 2 mM l-GlutaMAX and 10 mM HEPES. THP-1 cells were differentiated into macrophages with 30 ng/mL PMA for 24 h. The cells were maintained in a humidified incubator with 5% CO2 at 37°C. All the cell lines were tested for mycoplasma and were found to be negative.
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7

Differentiation and Stimulation of THP-1 Monocytes

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The human monocytic leukemia cell line THP-1 (American Type Culture Collection, Manassas, VA, USA) was cultured in RPMI 1640 (SH30027.01, Hyclone, Logan, UT, USA) containing 10% heat-inactivated fetal bovine serum (SH30919.03, Hyclone), 1% MEM non-essential amino acid solution (11140, Gibco, Grand Island, NY, USA), and 1% penicillin/streptomycin (P/S, 15140, Gibco) at 37°C in a 5% CO2 incubator. THP-1 cells were differentiated by incubating the cells with 10 ng/mL phorbol-12-myristate-13-acetate (PMA) for 24 h, with the media changed on the next day followed by further incubation for 24 h. To stimulate the cells, the cells were seeded into 6-well culture plates (140675, Thermo Fisher Scientific, Waltham, MA, USA) at 1 × 106 cells/well and treated with 1, 10, 100 and 1000 ng/mL LPS (L2637, Sigma, St. Louis, MO, USA). THP-1 cells depleted of MyD88 were purchased from InvivoGen (thpd-komyd, Carlsbad, CA, USA).
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8

Macrophage Generation from Mice and THP-1 Cells

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In the current study, two types of macrophages were utilized: bone marrow-derived macrophages (BMDMs) and human monocyte-like cell line (THP-1, Kore Cell Line Bank, Seoul, Republic of Korea)27 (link). Unless indicated otherwise, the cell culture materials were purchased from Capricorn Scientific GmbH (Edsdorfergrund, Germany), and the plastics were provided from SPL Life Sciences (Gyeonggi-do, Republic of Korea). To prepare the BMDMs, myeloid cells were collected from mice (C57BL/6, 6 to 12 weeks old, Narabio Co., Seoul, Republic of Korea), and differentiated to macrophages under L929 cell-conditioned media (LCCM) to supply macrophage colony-stimulating factors28 (link). The progenitors were cultured for seven days in RPMI 1640 media containing 10% fetal bovine serum (FBS), 30% LCCM, and antibiotics. THP-1 cells were cultured in RPMI 1640 media containing 10% FBS and antibiotics and differentiated to macrophage-like cells by a treatment of phorbol 12-myristate 13-acetate (200 nM, PMA; InvivoGen, San Diego, CA, USA) for 24 h. All cells were incubated at 37 °C in an atmosphere containing 5% CO2.
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