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43 protocols using mcf 7

1

Culturing and Conditioning of Cancer Cell Lines

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Human breast carcinoma cell lines MCF-7 and HCC1143, pancreas adenocarcinoma cell line PA-TU-8902, prostate >carcinoma cell line DU145 and lung carcinoma cell line NCI-H460 were obtained from DSMZ (German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany).
In general RPMI 1640 medium, supplemented with 2 mM L-Glutamine and 1% Penicillin-Streptomycin and FCS (either 10% or 1% according to the assay) was used for monocyte/macrophage, NCI-H460, HCC1143 and DU145 cell culture. For MCF-7 cells we used Eagle´s MEM, supplemented with 10% FCS, 2 mM L-Glutamine, 1% Penicillin/Streptomycin and 1 mM Sodium Pyruvate and for PA-TU-8902 cells Dulbecco´s MEM High Glucose supplemented with 1 mM Sodium Pyruvate, 2 mM L-Glutamine, 1% Penicillin/Streptomycin and either 10% or 1% FCS was used (all reagents from Sigma, Buchs, Switzerland).
Cell lines were kept under standard culture conditions (37°C, 5% CO2 and 95% humidity), tumour cell conditioned media were obtained by 24 h incubation of 90% confluent tumour cells in 10 ml of fresh culture medium in 25 cm2 cell flasks. Cell free supernatants were carefully harvested, filtered through 0.5 μm filters and stored in aliquots at −80°C.
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2

MUC1-Expressing Tumor Cell Lines for Preclinical Studies

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All cell culture reagents were purchased from Biowest and Serana. Tumor cell lines ZR-75-1, MCF-7, HSC-4, CaoV-3 and T-47D as well as the human NK cell line KHYG-1 and murine T cell line CTLL-2 were obtained from DSMZ or ATCC and cultured in the respective recommended medium under standard conditions. KHYG-1 and CTLL-2 were cultured in presence of 10 ng/mL IL-2 (PeproTech, Rocky Hill, NJ, USA).
For in vivo studies, the murine tumor cell lines B16.F10 and CT26.wt (ATCC) were stably transfected by electroporation (Amaxa) with a plasmid coding for human MUC1 (40 tandem repeats) and confirmed for TA-MUC1 expression in vitro and in vivo in mice by flow cytometry and immunohistochemistry using GT-00A. Cells were cultured in standard medium +100 nM methotrexate (Hexal, Holzkirchen, Germany) as selection pressure. For the metastasis model, hMUC1-B16.F10 cells were further transduced to stably express firefly luciferase (110 RLU/cell) enabling detection of metastasis. Origin, TA-MUC1 and IL-15R expression status of cell lines are indicated in Table S1.
Peripheral blood mononuclear cells (PBMCs) were prepared from commercially available buffy coats (DRK Berlin) or leukapheresates (Charité Berlin) of healthy donors by Biocoll separation (Biochrom, Cambridge, UK) and density gradient centrifugation. PBMCs from leukapheresate products were stored frozen in liquid nitrogen.
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3

Characterization of Neuroblastoma Cell Lines

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The MYCN-amplified neuroblastoma cell line UKF-NB-3 was established from a stage 4 neuroblastoma patient25 (link). The vincristine-resistant UKF-NB-3 sub-line UKF-NB-3rVCR10 (link) (adapted to growth in the presence of vincristine 10 ng/mL) was established by previously described methods25 (link) and derived from the Resistant Cancer Cell Line (RCCL) collection (https://research.kent.ac.uk/industrial-biotechnology-centre/the-resistant-cancer-cell-line-rccl-collection/)37 . The oesophageal cancer cell line COLO680N was obtained from ATCC (Manassas, VA, USA) and the ovarian cancer (COLO-704 and EFO-21) and breast cancer (BT-474 and MCF-7) cell lines from DSMZ (Braunschweig, Germany). All cell lines were propagated in Iscove’s modified Dulbecco’s medium (IMDM) supplemented with 10% FCS, 100 IU/ml penicillin and 100 mg/ml streptomycin at 37 °C. Cells were routinely tested for mycoplasma contamination and authenticated by short tandem repeat profiling.
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4

Culturing Cancer Cell Lines

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The cancer cell lines HeLa and MCF-7 were from DSMZ (Braunschweig, Germany), hTERT-RPE1 cells were from Clontech (Saint-Germain-en Laye, France). All cells were cultured according to the supplier's instructions without antibiotics. Fetal calf serum (FCS) was from PAA Laboratories (Cölbe, Germany), DMEM, RPMI 1640, phosphate buffered saline (PBS), glutamine, and trypsin were from Invitrogen (Karlsruhe, Germany). HCT116p53+/+ and HCT116p53 cells were cultured as instructed.
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5

Characterization of Cellular Bioenergetics

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All chemicals, including tosyl phenylalanyl chloromethyl ketone (TPCK)-treated trypsin, were from Thermo Scientific, unless otherwise stated. Acetonitrile (CH3CN, #15611400, Honeywell Riedel-de Haen), formic acid (FA, #10627431) and LC-MS grade water (#15651400, Honeywell Riedel-de Haen) were from Fisher Scientific. MC2494 was prepared as previously reported (17 (link)). Antibodies: PGC1α (#ab191838), PGC1β (#ab176328), and SOD2 (#ab13533) were from Abcam and GAPDH was from Santa Cruz (#sc-47724). Cell lines: U937 (#ACC5) human myeloid leukemia cells were purchased from DSMZ and MCF7 (#ICLCHTL95021) breast cancer cells from Cell Bank Interlab Cell Line Collection. U937 and MCF7 cells were propagated in RPMI (Euroclone #ECB9006) and DMEM (Euroclone #ECB7501), respectively, with 10% fetal bovine serum (FBS; Gibco #10270), 2 mM L-glutamine (Euroclone #ECB3000D), and antibiotics (100 U/mL penicillin, 100 μg/mL streptomycin, Euroclone #ECB3001D, and 250 ng/mL amphotericin-B; Euroclone #ECM0009). All cell lines were grown at 37°C with 5% CO2, and were then tested, authenticated, and used for 10–20 passages. Mycoplasma contamination was checked using EZ-PCR Mycoplasma Test Kit (Biological Industries #20-700-20).
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6

Culturing Human Endothelial and Cancer Cells

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The human umbilical vein endothelial cells (HUVECs, purchased from ATCC, cell NO. CRL-1730) and Michigan cancer foundation-7 (MCF-7, purchased from DSMZ, cell NO. 115) cells were cultured by using DMEM (Dulbecco’s Modified Eagle’s medium) containing fetal bovine serum (FBS, 10% (v/v)), penicillin (100 μg mL−1) and streptomycin (100 μg mL−1) at 37 °C with 5% CO2.
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7

Culturing Human and Canine Tumor Cell Lines

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Human tumor cell lines Caco-2, MCF-7, Hela (DSMZ, Braunschweig, Germany), OE-33, Kyse140, MDA-MB-231 as well as canine tumor cell lines39 (link),40 TiHoDMglCarc1305 (former called T120A,), TiHoDMglCarc1406.1 (former called DT14/06T) and TiHoDMglRef53A (former called MTH53A) were grown in tissue coated petri dishes at 37 °C in a humidified atmosphere containing 5% CO2. The human cell lines and canine cell lines were cultured in, respectively, DMEM Ham’s F12 (Biochrom) and M199 medium (Sigma) supplemented with 10% fetal calf serum, 100 units/mL penicillin and 100 µg/mL streptomycin.
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8

Cytotoxicity Evaluation of Compounds

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The cytotoxic activity of the compounds was measured in vitro using following human cancer cell lines: human ductal carcinoma T47D (ATCC, Rockville, MD, USA), human adenocarcinoma MCF-7, glioblastoma SNB-19 (DSMZ, Braunschweig, Germany), human malignant melanoma Colo-829 (ATCC, Rockville, MD, USA), and human amelanotic melanoma C-32 (ATCC, Rockville, MD, USA). The cells were grown in DMEM (Lonza, Basel, Switzerland) growth medium containing 10% fetal bovine serum (FBS) (Biological Industries, Cromwell, CT, USA), penicillin (10.000 U/mL) and streptomycin (10 mg/mL) (Lonza, Basel, Switzerland). Cells were seeded (5 × 103 cells/well) into 96-well plates (Nunc Thermo Fisher Scientific, Waltham, MA, USA) and incubated for 24 h at 37 °C in a 5% CO2 atmosphere at 95% humidity. The culture medium was replaced with a fresh aliquot containing the tested compounds (0.01–100 μg/mL). Next, the cells were incubated with the compounds for another 72 h. The cytotoxic activity was evaluated using a WST-1 test (Roche Diagnostics GmbH, Mannheim, Germany), which is based on the cleavage of the bright red-colored stable tetrazolium salt WST-1 to dark red soluble formazan by mitochondrial dehydrogenases in viable cells. The amount of formazan correlates directly with the amount of metabolically active cells in the culture, and is measured by absorbance (λ = 450 nm).
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9

Indirect co-culture of MCF-7 cells and macrophages

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The ER+ and PR+ human breast cancer cell line MCF‐7 was purchased from DSMZ and maintained in RPMI‐1640 medium (PAA Laboratories Inc., Cölbe, Germany) supplemented with 10% fetal calf serum (FCS, Invitrogen, Karlsruhe, Germany). Human macrophages were derived from mononuclear peripheral blood cells and were collected with approval of the local ethics committee in Göttingen.
Briefly, monocytes were obtained from buffy coats of healthy donors through double‐density‐gradient isolation. Macrophages were differentiated by culturing monocytes in fluorinated ethylene propylene‐coated cell culture bags (CellGenix, Freiburg, Germany) in the presence of M‐CSF (Immunotools, Friesoythe, Germany) for 7 days. Differentiation into mature macrophages was assessed by flow cytometry verification of CD11b, CD11c, CD14 and CD45 (Beckman Coulter, Krefeld, Germany) expression and negativity for CD209 (BioLegend, Fell, Germany). For indirect co‐culture experiments, macrophages were seeded in hanging cell culture inserts (0.4 μm pore size, PET; Millipore, Billerica, MA, USA) and co‐cultured with MCF‐7 cells at a ratio of 2:1 under normoxia for 24 h. All co‐culture experiments were performed with at least 3 biological replicates, i.e. with different passages of MCF‐7 cells and macrophages derived from different donors.
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10

Breast Cancer Cell Line Cultivation Protocol

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The human breast cancer cell lines SK-BR3, MDA-MB361, MCF7, and JIMT1 were obtained from the American Type Culture Collection (SK-BR3, MDA-MB361, ATCC®, Manassas, VA, USA), the RIKEN Cell Bank (MCF7, Ibaraki, Japan), and the DSMZ (JIMT1, Braunschweig, Germany). MDA-MB361 was established from a brain metastasis of breast cancer. JIMT1 was established from a pleural effusion of breast cancer and is insensitive to HER-2-inhibiting drugs, e.g., trastuzumab (Herceptin).
The SK-BR3 cell line was cultured in McCoy’s 5A medium (GIBCO®, Life Technologies, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS; GIBCO®, Life Technologies, Carlsbad, CA, USA) and 1% penicillin-streptomycin (Invitrogen, Life Technologies, Carlsbad, CA, USA). Other cell lines were cultured in DMEM (GIBCO®, Life Technologies, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin. All cell lines were kept in a humidified environment containing 5% CO2 at 37 °C. The medium was changed every other day.
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