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42 protocols using sodium oxamate

1

Isotopic Labeling of Metabolic Intermediates

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U-13C-glutamine (CLM-1822), U-13C-Glucose (CLM-1396-5), U-13C-Pyruvate (CLM-2440) and α-15N-glutamine (NLM-1016) were from Cambridge Isotopes Laboratories; 13C-bicarbonate (372382), L-aspartate (A8949) and Sodium Oxamate (O2751) and all remaining reagents were obtained from Sigma-Aldrich.
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2

Comparative Analysis of Melanoma Cell Line Responses to Diverse Treatments

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Human melanoma cell lines A375 (CLS Cat# 300110/p852_A-375, RRID:CVCL_0132) and C8161 (RRID:CVCL_6813; kindly provided by Prof. D. Constam, EPFL, Lausanne, Switzerland) were grown in DMEM supplemented with 10% FBS. Pooled human healthy primary melanocytes (ATCC) and primary melanocytes from individual donors (kindly provided by Prof. D. Fisher (Massachusetts General Hospital, Cutaneous Biology Research Center, Boston, USA) were grown in Melanocyte Growth Medium M2 supplemented with SupplementMix Melanocyte Growth Medium (PromoCell). All cultures were maintained at 37 °C in a 5% CO2 humidified atmosphere, with medium renewal every 2 or 3 days.
A375 cells were treated during 24 h with PLX4032 (100 nM; Axon Medchem), U0126 (5 μM; New England Biolabs), suberoylanilide hydroxamic acid (5 μM), colchicine (100 nM), camptothecin (1 μM), dichloroacetate (50 mM) and sodium oxamate (10 mM) all from Sigma-Aldrich. The effect of each drug was normalized to its corresponding control: the vehicle for PLX4032, U0126, suberoylanilide hydroxamic acid and camptothecin was DMSO, used alone in control cells at a maximal concentration of 0.1% (vol/vol); an equimolar sodium chloride solution was used as a control for colchicine, dichloroacetic acid and sodium oxamate treatments.
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3

Gastric Cancer Cell Line Establishment

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Cell culture and stable cell line establishment were performed as previously described (Wang et al. 2013 (link)). The human gastric epithelial cell line GES-1 and GC cell lines BGC-823, AGS, MKN-7, SGC-7901, MKN-28, MKN-45 and MGC-803 were purchased from Foleibao Biotechnology Development Company (Shanghai, China). Molecular authentication of each cell line was performed by short tandem repeat analysis, and passage numbers used for the experiments are provided (Supplementary Fig. 1). Cells were cultured in RPMI-1640 with 10% FBS at 37°C in 5% CO2. Sodium oxamate, an LDHA inhibitor, was obtained from Sigma–Aldrich. In the in vivo assay, cells exhibiting stable TOP1MT knockdown were established by transfection of BGC-823 and SGC-7901 cells with short hairpin RNA targeting TOP1MT (shTOP1MT) (Wang et al. 2013 (link)).
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4

Hypoxia-Induced Signaling Pathway Modulation

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N-acetyl-L-cysteine (NAC; A9165), MG132 (474790), lactic acid (252476), actinomycin D (A9415), and sodium oxamate (O2751) were purchased from Sigma-Aldrich (USA). The MAPK inhibitors PD98059 (S1177), SB203580 (S1076), and SP600125 (S1460) were purchased from Selleck Chemicals (USA). The fluorogenic probe, 2′, 7′-dichlorodihydrofluorescein diacetate (H2DCFDA; D399) was obtained from Thermo Fisher Scientific (USA). Primary antibodies against p-ERK1/2-Thr202/Tyr204 (#4370), ERK1/2 (#9102), β-actin (#3700), and LDHA (#2012) were purchased from Cell Signaling Technology (USA). Antibodies against HIF-1α (MAB1536), HIF-2α (NB100-122), MKP-3 (ab76310), and ubiquitin (ab134953) were obtained from R&D Systems (USA), Novus Biologicals (USA), and Abcam (UK), respectively. Secondary antibodies, including anti-mouse HRP-linked IgG antibody (sc-516102) and anti-rabbit HRP-linked IgG antibody (sc-2357), were obtained from Santa Cruz Biotechnology (USA).
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5

Targeting Metabolic Regulators in Cancer

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Sodium Azide (20 mM, Sigma-Aldrich), Sodium Oxamate (50 mM, Sigma-Aldrich), FX11 (10 μM, Calbiochem, San Diego, CA), BMS 536924 (5 μM, Tocris, Minneapolis, MN), Afatinib (5 μM, Selleckchem, Houston, TX), Dovitinib/TKI258 (5 μM, Selleckchem), Dasatinib (5 μM, Selleckchem), PD173074 (5 μM or 20 μM, Selleckchem), Actinomycin D (5 μM, Sigma-Aldrich, St. Louis, MO), FGF2 (2 μg/mL, Cell Signaling, Danvers, MA).
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6

Western Blot Analysis of Metabolic Enzymes

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For Western analysis antibodies to AKR1C2 (H00001646-D01, Abnova), AKR1C3 (H00008644-B01, Abnova), AKR1C4 (H00001109-M01, Novus), AKT1 (#2967, Cell Signaling), Caspase3 (sc-7148, Santa Cruz), SLC16A3 (OAAB08662, Aviva Systems Biology) PARP-1 (sc-74470, Santa Cruz), STAT3 (sc-81385, Santa Cruz), pSTAT3 (S2690, Sigma) and β-actin (ab8226, Abcam) primary antibodies and HRP-conjugated secondary antibodies (Dako) were used. Melphalan, ursodeoxyholate, indomethacin, flufenamic acid, dichloroacetic acid, 2-deoxy-D-glucose, sodium oxamate, metformin, oligomycin, antimycinA, FLLL31, wortmannin, rapamycin, methyl glyoxal, acetylsalicylic acid, ibuprofen, (Sigma Aldrich), tert-butyl peroxide (Fluka), LY294002, SB203580 and BIRB0796 (Cell Signaling) were used in viability assays.
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7

Glycolysis Modulation in Cancer Cells

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Treated cells were seeded on 6-well plates at a density of 1×106 cells per well and the culture medium was changed to low glucose DMEM without phenol red (Thermo Fisher Scientific) with or without drugs. Gemcitabine and c-Myc inhibitor 10058-F4 was purchased from Selleck Chemicals (Houston, TX, USA) and dissolved in DMSO. Sodium oxamate was purchased from Sigma-Aldrich (St Louis, MO, USA) and dissolved in water. The concentrations of glucose and lactate in the culture medium were measured after incubation of cells for 24 h with Glucose Assay Kit (Sigma-Aldrich) and Lactate Assay Kit (Jiancheng Bioengineering, Nanjing, China) individually. The glucose consumption and lactate production were normalized to cell numbers. The cell numbers were calculated and analyzed using the cellometer mini bright field automated cell counter (Nexcelom Bioscience, Lawrence, MA, USA).
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8

Isotopic Profiling of Glucose Metabolism

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EGCG, sodium oxamate and unlabelled glucose were purchased from Sigma-Aldrich (St. Louis, MO). Stable [1, 2- 13C2]-d-glucose isotopes were purchased from Isotec, Inc. (Miamisburg, OH) with 99% purity and 99% isotope enrichment for each position. Recovery standards [U-13C6]-glucose and [U-13C3]-lactate were purchased from Cambridge Isotope Laboratories, Inc. (Tewksbury, MA). Isotope incubation and treatment were performed as described previously (Harris et al., 2012 ).
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9

Isotopic Labeling of Metabolic Intermediates

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U-13C-glutamine (CLM-1822), U-13C-Glucose (CLM-1396-5), U-13C-Pyruvate (CLM-2440) and α-15N-glutamine (NLM-1016) were from Cambridge Isotopes Laboratories; 13C-bicarbonate (372382), L-aspartate (A8949) and Sodium Oxamate (O2751) and all remaining reagents were obtained from Sigma-Aldrich.
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10

Metabolic profiling of Mrs2 KO mice

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80–200 μL of blood was collected via tail vein of C57BL/6 WT and Mrs2 KO mice and placed into K2 EDTA-coated tubes. Following collection, blood was spun at 10,000×g for 5 min at 4°C and plasma was removed from the top layer. Using a 1:3 dilution with DNAse/RNAse-free distilled water, glucose and lactate measurements were taken using a YSI 2900 Series Biochemistry Analyzer per the manufacturer’s instructions and reported as mg/dL.
To measure extracellular lactate, hepatocytes from WT and Mrs2 KO mice were plated in collagen-coated 6-well plates (BioCoat, Corning) at a density of 1.2 × 106 cells per dish in hepatocyte culture media. Cells were then treated with 100 μg/mL LPS and 20 mM sodium oxamate (Sigma-Aldrich), alone or in combination. 150 μL of media from the cells was collected at the following time points: 0 hours (2 hours post-plating), 8 hours, and 24 hours after the addition of compounds. Extracellular lactate production was then measured by subjecting collected media samples to analysis using a YSI 2900 Series Biochemistry Analyzer per the manufacturer’s instructions and results reported as mg/dL.
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