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11 protocols using multi gauge software of science lab 2006

1

NLRP3 Inflammasome Protein Expression

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Total proteins were extracted from heart tissues or endothelial cells using protein extraction reagents. Protein concentrations were quantified, and equal amounts of proteins (60 μg) were separated by 12% SDS-PAGE gel and electro-transferred to nitrocellulose membranes. After blocking with 5% skimmed milk for 2 h, membranes were incubated with the following primary antibodies at 4 °C overnight: NLRP3 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 19771-1-AP), caspase-1 (Proteintech, Chicago, USA, 1:1000, Cat. No.: 22915-1-AP), GSDMD (Santa Cruz, USA, 1:500, Cat. No.: A2315), IL-1β (ABclonal, Boston, USA, 1:1000, Cat. No.: A1112), IL-18 (ABclonal, Boston, USA, 1:1000, Cat. No.: A1115), Transferrin (BIOSS, Beijing, China, 1:1000, Cat. No: bs-2052R), or GAPDH (Proteintech, Chicago, USA, 1:2000, Cat. No: 60004-1-lg). After washing with TBST, membranes were incubated with HRP-conjugated secondary antibody (1:10,000) for 2 h. Western blot bands were analyzed with the ChemiDicTM XRS+ Imaging System (Bio-Rad Laboratories, Hercules, CA, USA), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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2

Protein Expression Profiling in Cardiovascular and Immune Cells

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Total proteins were extracted from heart tissues or RAW264.7 cell lysates and supplemented with a cocktail of protease inhibitors and phosphatase inhibitors. Proteins were quantified to an equivalent amount, separated by SDS-PAGE gel, and electro-transferred to a PVDF membrane. Having been blocked in 5% skimmed milk, membranes were incubated with antibodies: anti-LFA-1 (ITGAL, Affinity Biosciences. DF5625, 1:1000), anti-p-JNK (Affinity Biosciences. AF3318, 1:1000), anti-total JNK (Affinity Biosciences. AF6138, 1:1000), anti-p-ERK (Affinity Biosciences. AF1015, 1:1000), anti-total ERK (Affinity Biosciences. AF0155, 1:1000), anti-p-p38(Affinity Biosciences. AF4001, 1:1000), anti-total p38 (Affinity Biosciences. AF6456, 1:1000) and GAPDH. The loading control was GAPDH (Proteintech, 60004-1-lg, 1:10000). Western blot bands were analyzed with the ChemiDicTM XRS + Imaging System (Bio-Rad Laboratories, Hercules, CA, USA), and the densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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3

Investigating FGF10's Role in ER Stress and Apoptosis

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To assess the regulatory role of FGF10 on ER stress and apoptosis, the expression of relevant proteins was analyzed by western blot. For protein analysis of in vivo samples, total kidney tissues (contain both of cortex and medulla, but don't contain the renal fibrous capsule) were homogenized and total proteins were extracted using tissue lysis buffer. For protein analysis of in vitro samples, NRK-52E cultured in a petri dish was rinsed with PBS buffer three times; total proteins were extracted using cell lysis buffer. An equivalent of 100 μg protein of the in vivo sample (30 μg protein of the in vitro sample) was separated by Sodium Dodecyl Sulfate PolyAcrylamide and then transferred to a polyvinylidene fluoride (PVDF) membrane for immunoblot analysis. Primary antibodies against cleaved Caspase-3 (1:1,000), cleaved Caspase-9 (1:1,000), Bax (1:3,000), Bcl-2 (1:1,000), GRP78 (1:1,000), CHOP (1:5,000), XBP-1 (1:1,000), ATF-4 (1:1,000), ATF-6 (1:2,000), PDI (1:2,000), ERK1/2 (1:1,000), and phosphor-ERK1/2 (1:1,000) were used in the present study. GAPDH (1:2,500) was used as loading control. The signals were visualized with the ChemiDic™ XRS + Imaging System (Bio-Rad Laboratories). The band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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4

Renal Protein Analysis in vivo

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For protein analysis of in vivo samples, renal tissues were dissected, snap frozen and stored at −80°C. Protein extracts from renal tissues were prepared by centrifuging the complex mixed 0.1 g kidney with protein extraction reagents and subjected to Western blot. Protein concentrations were measured with a BCA Protein Assay Kit. Equal amounts of protein were loaded into lanes and separated on SDS‐PAGE, followed by transfer to a polyvinylidene fluoride membrane. After blocking in 5% skim milk in Tris‐buffered saline/0.1% Tween‐20 (TBST), the membrane was incubated with following antibodies against Kir6.2, Bcl‐2, Bax, 3‐Nit, cytochrome C, caspase‐3, VDAC and GAPDH, respectively. After washing with TBST three times, membranes were incubated with secondary antibodies for 1 hr at room temperature. The signals were visualized with the ChemiDoc XRS+Imaging System (Bio‐Rad Laboratories, Hercules, CA, USA). The band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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5

Spinal Cord Injury Protein Analysis

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Tissue obtained from the central part of the SCI area was frozen at −80°C for subsequent Western blot analysis. Cell lysates containing phenylmethanesulfonyl fluoride and phosphatase inhibitors were homogenized. The homogenate was then centrifuged to have supernatant collected. The concentration of protein was quantified using Coomassie blue. Gels were loaded per lane with 40 μg protein and then transferred onto polyvinylidene fluoride membranes (bio-rad, Hercules, CA, United States). Membranes were incubated with a rapid blocking solution (Beyotime, Shanghai, China) for 20 min. The samples were treated with primary antibodies overnight at 4°C including Caspase3 (1:1000), C-Caspase3 (1:1000), CHOP (1:1000), Caspase12 (1:1000), GRP78 (1:1000), Bax (1:1000), Bcl-2 (1:1000), and GAPDH (1:5000), and then incubated with secondary antibodies at room temperature for 2 h. The signal was detected via ChemiDoc XRS + Imaging System (Bio-Rad). Multi-Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan) was used to measure the bands. ImageJ (version 1.8.0) was used to quantitatively analyze the bands.
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6

Protein Expression Analysis in HBMEC

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Total proteins were purified using protein extraction reagents for the right brain cortical region and HBMEC. The equivalent of 60 μg of protein was separated by 12 % gel and then transferred onto a PVDF membrane. After blocking with 5 % fat-free milk, the membranes were incubated with the following antibodies: claudin-5 (1:500), ZO-1 (1:200), occluding (1:500), p-Akt (1:500), p120-catenin (1:1000), β-catenin (1:1000), CD31 (1:1000), GTP-Rac1 (1:1000), total-Rac1 (1:1000), GTP-RhoA (1:1000), and total-RhoA (1:1000) overnight. The membranes were washed with TBS and treated with horseradish peroxidase-conjugated secondary antibodies for 2 h at room temperature. The signals were visualized with the ChemiDicTM XRS+ Imaging System (Bio-Rad Laboratories, Hercules, CA, USA), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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7

Protein Extraction and Western Blot Analysis

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Total proteins were purified using protein extraction reagents for the heart tissue and H9C2 cells. The equivalent of 50 μg of protein was separated on a 12% gel and then transferred onto a PVDF membrane. After blocking with 5% fat-free milk, the membranes were incubated with the relevant protein antibodies overnight. The membranes were washed with TBS and treated with secondary antibodies for 2 h at room temperature. The signals were visualized with the ChemiDicTM XRS + Imaging System (Bio-Rad Laboratories, Hercules, CA, USA), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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8

Protein Quantification in Heart Tissue and Cells

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Total proteins were purified using protein extraction reagents for the heart tissue and H9C2 cells. The equivalent of 50 μg of protein was separated by 12% gel and then transferred onto a PVDF membrane. After blocking with 5% fat-free milk, the membranes were incubated with the relevant protein antibodies overnight. The membranes were washed with TBS and treated with secondary antibodies for 2 hrs at room temperature. The signals were visualized with the ChemiDicTM XRS + Imaging System (Bio-Rad Laboratories), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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9

Western Blot Analysis of ER Stress Markers

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A 30-µg protein extract was re-suspended in SDS-PAGE loading buffer, boiled at 95 °C for 10 min, separated by 11.5% SDS-PAGE, and then transferred onto a polyvinylidene difluoride membrane. After protein transfer, the membranes were incubated with Tris-buffered saline containing 0.1% Tween 20 (TBST) with 5% non-fat milk for 1 h blocking at room temperature with shaking, and with the corresponding primary antibodies, anti-GAPDH (1:1000, Santa Cruz Biotech, Paso Robles, CA, USA), anti-GRP78 (1:300, Santa Cruz Biotech, Paso Robles, CA, USA), anti-CHOP (1:300, Santa Cruz Biotech), anti-Akt and anti-p-Akt (1:300, Santa Cruz Biotech), anti-GSK3β and anti-p-GSK3β (1:300, Santa Cruz Biotech), and anti-caspase-12 (1:1000, Abcam, Cambridge, UK) at 4 °C overnight.
After incubation in TBS, the membranes were washed three times using TBST, and subsequently incubated with horseradish peroxidase-conjugated secondary antibodies (1:3000, Santa Cruz Biotech) at room temperature for 2 h. The signals were visualized using the ChemiDocTM XRS+ Imaging System, and band densities were quantified using Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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10

Western Blot Analysis of Uterine Proteins

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Total proteins from injured uterine tissues and primary mouse EECs were purified using protein extraction reagents according to the instructions. The equivalent of 20 μg of protein was separated by 12% gel and transferred onto PVDF membrane (Bio-Rad, Hercules, CA, USA). After blocking with 5% fat-free milk for 2 h, the membranes were incubated with the relevant protein antibodies overnight. TBST were used to wash the membranes three times. After this process, the membranes were treated with horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature. The signals were visualized with the ChemiDicTMXRS + Imaging System (Bio-Rad Laboratories), and the band densities were quantified with Multi Gauge Software of Science Lab 2006 (FUJIFILM Corporation, Tokyo, Japan).
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