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6 protocols using alexa 488 phalloidin

1

Labeling F-actin in Cochlear Tissue

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F-actin was stained with Alexa 488 conjugated phalloidin. Briefly, formalin-fixed cochleae were washed with PBS three times and permeabilized with 0.25% Triton X-100 for 10 min. Thereafter, the cochlear tissue was labeled with Alexa 488-phalloidin (1: 200; Sigma–Aldrich) for 30 min. After three washes with PBS, the specimens were counterstained with DAPI, and imaged using Leica TCS SP8 MP confocal microscope.
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2

Quantitative Analysis of Angiogenic Potential

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Different groups of collagen/hydroxyapatite scaffolds containing HUVEC spheroids were washed three times with PBS and were fixed with 4% paraformaldehyde for 1 h. After cell permeabilization with PBS + 1% Triton-X100 (Sigma), the cells were washed with PBS and stained with Alexa488-Phalloidin (10 μg/mL in bovine serum albumin, Sigma-Aldrich, USA) and Hoechst 33342 (1 μg/mL, Promocell, Heidelberg, Germany) at room temperature for 1 h. After three wash steps with PBS, images were taken using an Axio Observer Z1 fluorescence microscope (Zeiss, Oberkochen, Germany) at 10× magnifications. Spheroids were quantified using the ImageJ software in order to measure the length of the sprouts and to calculate the cumulative sprout length (CSL). Data from at least 10 spheroids per experimental group were calculated.
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Quantifying Angiogenic Potential of Collagen-Hydroxyapatite Scaffolds

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Collagen/hydroxyapatite peptide-functionalized scaffolds containing HUVEC spheroids were washed three times with PBS and fixed with 4% paraformaldehyde for 1 h. After cell permeabilization with PBS + 1% Triton-X100 (Sigma), cells were washed with PBS and stained with Alexa488-Phalloidin (10 μg/mL in bovine serum albumin, Sigma, St. Louis, MO, USA) and Hoechst 33342 (1 μg/mL, Promocell, Heidelberg, Germany) at room temperature for 1h. After three wash steps with PBS, images were taken using an Axio Observer Z1 fluorescence microscope (Zeiss, Oberkochen, Germany) in 10× and 20× magnifications. Spheroids were quantified using the length tool of the Axio Vision software of the Observer Z1 fluorescence microscope (Zeiss, Oberkochen, Germany) in order to measure the length of the sprouts and calculate the cumulative sprout length (CSL). Therefore, the lengths of all capillary-like sprouts originating from the central plain of an individual spheroid were added to one value. At least 10 spheroids per experimental group were analyzed.
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4

Immunofluorescence Staining of Mechanosensitive Proteins

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Cultures were washed in PBS and fixed in 4% (w/v) paraformaldehyde for 15 min at room temperature (RT). Cultures were then placed in 5% (w/v) bovine serum albumin (BSA, Sigma Aldrich) in 0.1 M Triton X-100 in H2O (PBT) for 1 h at RT and then treated with primary antibodies (YAP, sc101199, Santa Cruz, 1:100; pMLC2, 3671S, Cell Signaling Technology 1:100; collagen type II, ab34712, Abcam 1:200) in 5% (w/v) BSA in PBT overnight at 4 °C. Cultures were washed in 3% (w/v) BSA in PBT with gentle agitation. Primary antibodies against pMLC2 and collagen type II were visualised after incubating with ab150077 (Abcam) for 1 h at RT (1:500 in 5% (w/v) BSA + PBT). Antibodies against YAP were detected using biotin conjugate secondary antibody (ab6788, Abcam) which were detected with a fluorescently labelled streptavidin biotin-binding protein (S11223, Thermo Fisher Scientific). The secondary antibody solution also included 0.1 μg/ml DAPI. Fluorescence signal was imaged on an Axiovert200M microscope (Zeiss). Following imaging, PA gels were re-stained with Alexa488 Phalloidin (Sigma Aldrich) at 1:200 in PBS for visualisation of the actin cytoskeleton.
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5

Actin Polymerization and Visualization

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Rabbit skeletal muscle lyophilized actin (Cytoskeleton, Inc) was dissolved in G-buffer (5 mM Tris-HCl, pH 8.0), 0.2 mM CaCl2, 0.2 mM ATP, 0.5 mM DTT, 1 mM NaN3) to the concentration of ~8 μM, incubated on ice for 1 h and injected into Superdex 75 10/300 GL (Amersham Biosciences) gel filtration column. Monomer fractions were collected and used for the experiment. Usually, the fractions contained G-actin concentration of 3–5 μM. Then we polymerized 1 μM G-actin by addition of salts (50 mM KCl, 2 mM MgCl2, 1 mM ATP) in the presence of IPP buffer or IPP protein (1:1 molar ratio) and the filaments were labeled with ~1 μM Alexa 488-phalloidin (Sigma). Prior to the visualization, 1 μl of sample was added to 9 μL of F-buffer (G-buffer above plus salts) and applied to a cover slip coated with poly-L-lysine (0.01%). Widefield images were acquired using a Leica DM5000B upright fluorescence microscope (Leica Microsystems, GmbH, Wetzlar, Germany), equipped with a Retiga SRV camera and QCapture Pro software (QImaging, Surrey, BC Canada). Confocal images were acquired using a Leica TCS-SP5 II upright confocal microscope (Leica Microsystems, GmbH, Wetzlar, Germany).
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6

Actin Cytoskeleton Visualization in Arabidopsis Pollen

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Arabidopsis pollen grains and pollen tubes were subjected to actin staining with Alexa-488 phalloidin (Thermo Fisher Scientific, A12379) as previously reported [58 (link),59 (link)]. To determine the effect of LatB on the actin cytoskeleton, pollen grains or pollen tubes were treated with 150 nM LatB in liquid GM for 30 min before fixation with 300 μM 3-maleimidobenzoic acid N-hydroxysuccinimide ester crystalline (Sigma-Aldrich, M2786) and subsequent staining with Alexa-488 phalloidin. The samples were visualized under an Olympus FluoView FV1200 confocal microscope equipped with a 100× oil immersion objective (1.4 numerical aperture) and were excited under a 488-nm argon laser with the emission wavelength set at 505 to 545 nm. The z-series images were collected with the step size set at 0.5 μm. The amount of F-actin in pollen grains and pollen tubes was quantified by measuring the intensity of the fluorescent pixels with ImageJ software (http://rsbweb.nih.gov/ij/; version 1.48g) as reported previously [10 (link)].
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