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1

Western Blot Analysis of Mouse Brain Proteins

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RIPA extracts from mouse brain homogenates were used for western Blot analyses as previously described14 (link),15 (link). Briefly, samples were electrophoresed on 10% Bis-Tris gels or 3–8% Tris-acetate gel (Bio-Rad, Richmond, CA), transferred onto nitrocellulose membranes (Bio-Rad) and then incubated overnight at 4 °C with the appropriate primary antibodies; anti-5LO [dilution: 1:200] (Santa Cruz, Dallas, TX), anti-HT7 [1:200] (Thermo, Waltham, MA), anti-AT8 [1:100] (Thermo), anti-AT270 [1:200] (Thermo), anti-PHF13 [1:100 (Thermo)], anti-SYP [1:300] (Santa Cruz), anti-PSD95 [1:200] (Thermo), anti-GSK3α/β [1:100] (Cell Signaling, Danvers, MA), anti-pGSK3α/β [1:100] (Cell Signaling), anti-SAPK/JNK [1:100] (Cell Signaling), anti-pSAPKJNK [1:100] (Cell Signaling), anti-cdk5 1[:200] (Santa Cruz), anti-p35/p25 [1:100] (Santa Cruz), anti-PP2A [1:200] (Santa Cruz), anti-GFAP (Santa Cruz), anti-Iba1[1:100] (Thermo) and anti-Beta actin [1:500] (Santa Cruz). After three washings with T-TBS (pH 7.4), membranes were incubated with IRDye 800CW-labeled secondary antibodies (LI-COR Bioscience, Lincoln, NE) at room temperature for 1 h. Signals were developed with Odyssey Infrared Imaging Systems (LI-COR Bioscience, Lincoln, NE). β-Actin was always used as an internal loading control.
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2

Western Blot Analysis of Neurotransmitter Receptors

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Immunoblot analysis was carried out under standard conditions (Marrocco et al., 2012 (link)) using the following primary antibodies: anti-tyrosine hydroxylase (TH H126, Santa Cruz, 1:1000); anti-D1 receptors (Ab20066, Abcam, 1:500), anti-D2 receptors (Ab85367, Abcam, 1:500), anti-DAT (high affinity DA transporter) (ab111468, Abcam, 1:1000); anti-adenosine receptors (sc-13937, Santa Cruz, 1:500), synaptic vesicle-associated proteins: anti-Rab3a (#107111, Synaptic Systems, 1:2000); anti-Munc18 (#116011, Synaptic Systems 1:2000; anti-SNAP 25 (sc-136,267, Santa Cruz 1:5000); anti-SYP (sc-9116 Santa Cruz 1:8000), and anti-syntaxin (sc-13994, Santa Cruz 1:4000). Secondary antibodies directed against rabbit or mouse antibodies (Amersham) were used at 1:7500 dilution. After immunoblotting, digitized images of bands immunoreactive to the target antibodies and actin were acquired (FUSION®) and the area of immunoreactivity corresponding to each band was measured using ImageJ imaging software. The ratios of the targets to actin were then determined and these values were compared to check statistical significance.
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3

Characterization of iPSC-Derived Neuronal Cultures

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To characterize iPSC-derived neuronal cultures, neurons were fixed with 3.7% FA in 4% sucrose 14 days after the start of differentiation (d14). After blocking and permeabilization, neurons were stained with primary and secondary antibodies as described before [41 ]. The following antibodies were used: anti-TAU (rabbit, K9JA, Dako (Jena, Germany), A0024), anti-MAP2 (chicken, Abcam (Camebridge,. UK), ab5392), anti-vGlut1 (mouse, Merck Millipore (Burlington, MA, USA), MAB5502), anti-ChAT (rabbit, Thermofisher Scientific, PA5-26597), anti-SYP (mouse, Santa Cruz Biotechnology (Dallas, TX, USA), sc-17750), anti-vGlut1 (rabbit, Synaptic Systems (Göttingen, Germany), 135303), anti-PSD95 (mouse, Biolegend (San Diego, CA, USA), MMS-5182), anti-rabbit IgG Alexa-Fluor-488 (donkey, Thermofisher Scientific, A21206), anti-mouse IgG Alexa-Fluor-488 (donkey, Thermofisher Scientific, A21202), anti-chicken IgG AlexaFluor-647 (goat, Thermofisher Scientific, A21449), anti-rabbit IgG AlexaFluor-568 (goat, Thermofisher Scientific, A11011), anti-mouse IgG AlexaFluor-568 (donkey, Thermofisher Scientific, A10037).
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Western Blot Analysis of Cell Signaling Proteins

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Cancer cells were collected and lysed in RIPA lysis buffer supplemented with protease and phosphatase inhibitors. Protein concentration was measured by BCA assay. Samples in SDS sample buffer were heat-denatured at 95 °C for 5 min. The proteins were separated by SDS-PAGE, transferred onto a nitrocellulose membrane, and blotted with primary antibodies including anti-MCM2 (sc-373702, 1:1000 dilution), anti-MCM3 (sc-390480, 1:1000 dilution), anti-MCM4 (sc-28317, 1:1000 dilution), anti-MCM6 (sc-393618, 1:1000 dilution), anti-AR (sc-7305, 1:1000 dilution), anti-SYP (sc-17750, 1:2000 dilution), anti-CD56 (sc-7326, 1:500 dilution), anti-cleaved PARP1 (sc-56196, 1:1000 dilution), anti-β-Actin (sc-47778, 1:2000 dilution), and anti-GAPDH (sc-47724, 1:2000 dilution) purchased from Santa Cruz Biotechnology. Secondary HRP conjugated antibody (PI31432, 1:6000 dilution) was purchased from Fisher Scientific. Western blot development and detection was performed using Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific) and IVIS Lumina optical imaging system (PerkinElmer). All the raw images of Western blot were summarized in Supplementary Fig. 4.
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5

Western Blot Analysis of Mouse Brain

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RIPA (radio immunoassay precipitation) extracts from mouse brain homogenates were used for Western blot analyses as previously described (Di Meco et al., 2014; Giannopoulos et al., 2013). Briefly, samples were electrophoresed on 10% Bis–Tris gels or 3%–8% Tris–acetate gel (Bio‐Rad, Richmond, CA, USA), transferred onto nitrocellulose membranes (Bio‐Rad), and then incubated overnight at 4°C with the appropriate primary antibodies; anti‐5LO [dilution: 1:200] (Santa Cruz, Dallas, TX, USA), anti‐HT7 [1:200] (Thermo, Waltham, MA, USA), anti‐AT8 [1:100] (Thermo), anti‐AT180 [1:200] (Thermo); anti‐AT270 [1:200] (Thermo), anti‐PHF1 (generous gift of Dr. Peter Davies); anti‐PHF13 [1:100 (Thermo)], anti‐SYP [1:300] (Santa Cruz), anti‐PSD95 [1:200] (Thermo), anti‐MAP2 [1:1,000] (Millipore), anti‐GSK3α/β [1:100] (Cell Signaling, Danvers, MA, USA), anti‐pGSK3α/β [1:100] (Cell Signaling), anti‐cdk5 [1:200] (Santa Cruz), anti‐p35/p25 [1:100] (Santa Cruz), anti‐GFAP (Santa Cruz), anti‐CD45 [1:100] (Thermo) and anti‐Beta actin [1:500] (Santa Cruz). After three washings with T‐TBS (pH7.4), membranes were incubated with IRDye 800CW‐labeled secondary antibodies (LI‐COR Bioscience, Lincoln, NE, USA) at room temperature for 1 hr. Signals were developed with Odyssey Infrared Imaging Systems (LI‐COR Bioscience). β‐Actin was always used as internal loading control.
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