The largest database of trusted experimental protocols

295 protocols using pclamp 9

1

Patch Clamp Electrophysiology of Cultured Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures were perfused continuously with a HEPES-buffered saline (HBS) composed of (in mM): NaCl 140, KCl 5, MgCl2 2, HEPES 10, D-glucose 10 and CaCl2 2, pH 7.4 ± 0.02. Fire polished borosilicate glass microelectrodes (4-6 MΩ, Harvard Apparatus, UK) were filled with an internal solution containing (in mM): KMeSO3 130, KCl 20, HEPES 10, EGTA 0.5, MgATP 4 and GTP 0.3, pH 7.2. All experiments were performed at room temperature (21-23°C) using an Axopatch-200B amplifier (Molecular Devices, USA) connected to a personal computer interfaced with Digidata 1322A interface (Molecular Devices, USA) and captured using pClamp9.0 software (Molecular Devices, USA). In all experiments, neurons with an initial resting membrane potential greater than -55mV were rejected. Spontaneous action potential (sAP) firing, digitised at 5kHz, was recorded from neurons held at -65 mV using whole cell patch clamp in current clamp mode. For current–voltage relationships, cells were held at -70mV in voltage clamp mode with 10mV increments at 10s intervals. mEPSCs, digitized at 5 kHz, were recorded at -70 mV for 5 minute periods in voltage-clamp mode.. Data were analysed offline using pClamp9.2 software (Molecular Devices, USA) and MiniAnalysis software (Synaptosoft, USA).
+ Open protocol
+ Expand
2

Whole-cell Recordings of Substantia Nigra Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell recordings were obtained from isolated SNc using an Axopatch 200B amplifier (Molecular Devices, Sunnyvale, CA, USA) with a Digidata-1320A/D converter and analyzed using pClamp9 software (Molecular Devices). The Patch pipettes resistances were 3.0~3.5 MΩ. Recording pipettes were filled with (in mM): 135 CsCl, 2 MgCl2, 10 HEPES, 11 EGTA, 4 ATP-Na2 (pH 7.3). Series resistances were compensated (>50%) and monitored at regular intervals. Leakage and capacitive currents were subtracted on-line from active responses using P/5 protocols. Data graphing and response analyses were performed with the Graph-Pad Prism8.0 (GraphPad Software Inc.) and pClamp9 (Molecular Devices).
+ Open protocol
+ Expand
3

Patch-Clamp Technique for Electrophysiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
The whole-cell configuration of the patch-clamp technique was performed at room temperature using an Axopatch 700 A amplifier (Molecular Devices LLC, Sunnyvale, CA, USA) with PCLAMP 9 software (Molecular Devices LLC). The pipette internal solution contained 140 mM KCl, 10 mM 4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES), 1 mM MgCl2, 10 mM ethylene glycol tetra-acetic acid, 1 mM NaCl, 5 mM phosphocreatine-Tris and 0.3 mM Na2ATP (pH 7.2). The bath solution contained 140 mM NaCl, 10 mM glucose, 10 mM HEPES, 1 mM MgCl2 and 1 mM CaCl2 (pH 7.35). For the current-clamp experiments, the cells were held at −82 mV, and step currents were injected to elicit an action potential. For the voltage-clamp experiments, the cells were held at −50 mV, and a series of depolarizing 20 mV voltage steps between −70 and +30 mV was applied every 2 sec. For the sodium channel blocking experiment, 200 nM tetrodotoxin (TTX) was used. Analyses were performed using Origin (OriginLab Corporation, Northampton, MA, USA) and PCLAMP 9 software (Molecular Devices LLC).
+ Open protocol
+ Expand
4

Measurement of Cellular Electrophysiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Data were transferred to a computer hard disk after digitization with an A/D converter (Digidata 1322, Molecular Devices). Data acquisition (digitized at 10 kHz and filtered at 2 kHz) was performed with pClamp 9.2 software (Molecular Devices, Sunnyvale, CA, USA).
In voltage clamp mode, cells were stimulated with a 100 ms lasting hyperpolarizing stimulus (10 mV), then, in the recording, area below the capacitative transients was measured and normalized for voltage transient amplitude to calculate cellular capacitance; input resistance was obtained through Ohm's law, by measuring the amplitude of steady state current generated by voltage transient. Spontaneous postsynaptic currents were analyzed using pClamp 9 (Molecular Devices, Sunnyvale, CA, USA). This program uses a detection algorithm based on a sliding template. The template did not induce any bias in the sampling of events because it was moved along the data trace by one point at a time and was optimally scaled to fit the data at each position. All the collected events were averaged and the amplitude of current was calculated as that of the mean trace.
Statistical significance was tested using unpaired Student t-test (Origin, Northampton, MA, USA). A p < 0.05 was considered as statistically significant. Values are given as mean ± SEM.
+ Open protocol
+ Expand
5

CFTR Channel Kinetics Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Macroscopic CFTR currents were digitally filtered at 50 Hz, downsampled to 100 Hz, and baseline subtracted (pCLAMP 9, Molecular Devices). Mean steady-state currents under various experimental conditions were normalized to that obtained during the first exposure to 2 mM ATP + 300 nM PKA in the same patch. The macroscopic current activation time course in Fig. 1A was fit to a two-step activation scheme, W→R→P, yielding sequential activation rates ka1 and ka2, and the deactivation time course to a single-step process, P→D, yielding rate kPPase, using nonlinear least-squares methods (pCLAMP 9, Molecular Devices). The time course of channel open probability predicted by the scheme in Fig. 5A for the experimental protocol in Fig. 5B (Fig. 5B, red curve) was calculated using standard Q matrix procedures (40 ).
+ Open protocol
+ Expand
6

Whole-cell Patch-clamp Recordings of Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell patch-clamp recordings of neurons were performed at room temperature using an inverted microscope and an EPC-10 amplifier (HEKA). Cells in different groups were maintained in a bath solution of 150 mM NaCl, 4 mM KCl, 2 mM MgCl2, 2 mM CaCl2, 10 mM HEPES, and 10 mM glucose (pH 7.4, 300 mOsm). Patch pipettes were pulled and polished to yield a resistance of 3–4 MΩ when filled with the intracellular solution [130 mM K-gluconate, 6 mM KCl, 3 mM NaCl, 0.2 mM EGTA, 10 mM HEPES, 4 mM ATP-Mg, 0.4 mM GTP-Na, and 14 mM phosphocreatine-di(Tris) (pH 7.2, 285 mOsm)]. During recordings, the pipette capacitance was neutralized, and access resistance was continuously monitored. In the current-clamp recording mode, action potentials were elicited by a depolarizing step current from − 60 pA to 120 pA at 20pA increments and 800 ms in duration. In the voltage-clamp mode, whole-cell currents were evoked with voltage steps ranging from − 60 to 30 mV at 10-mV increments. Then, the tetrodotoxin (TTX, 1 μM) was applied to the chamber, and the voltage steps were repeated to examine TTX-sensitive currents. Currents were filtered and digitized at 3 and 10 kHz, respectively, and the data were analyzed using pClamp 9.0 (Axon Instruments).
+ Open protocol
+ Expand
7

Voltage-Clamp Electrophysiology Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
In voltage-clamp experiments, the total currents were recorded using an extracellular solution containing 130 mM NaCl, 3 mM KCl, 1 mM CaCl2, 2 mM MgCl2, 10 mM glucose, and 10 mM HEPES-HCl, pH 7.4). The patch pipette was filled with 130 mM KCl, 2 mM MgCl2, 10 mM glucose, 5 mM EGTA and 10 mM HEPES-NaOH (pH 7.4). The electrophysiological recordings were carried out at room temperature using the whole-cell configuration of the patch-clamp technique [25] (link), [26] (link). Stimulation, acquisition, and data analysis were performed using the pCLAMP 9.0 and Clampfit software (Axon Instruments, Burlingame, CA, USA). The cells were clamped to a holding potential of −90 mV and the currents recorded from −100 mV to +65 mV, in increments of 5 mV. The components of the leak and capacitive currents were cancelled using the P/N method. The patch pipettes had a resistance of 3 MΩ to 6 MΩ, and to reduce their capacitance, their tips were coated with Sylgard. A sampling interval of 25 µs point−1 was used, and the currents were filtered at 5 kHz.
+ Open protocol
+ Expand
8

Patch-clamp electrophysiology of HEK-293 cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Conventional whole-cell configurations of the patch-clamp technique were used in the electrophysiological study. Signals were amplified using an Axopatch 200B amplifier (Axon Instruments) and filtered at 1 kHz. Data acquisition and analysis were carried out using pClamp 9.0 (Axon Instruments, San Jose, CA, USA) software. Patch electrodes were pulled from a horizontal micropipette puller (P-1000, Sutter Instruments, Novato, CA, USA) and fire polished to a final tip resistance of 4–6 MΩ when filled with internal solutions. For whole-cell recording on HEK-293 cells, the pipette solution contained (in mM) 140 KCl, 2 MgCl2, 10 HEPES, 0.1 EGTA, 4 K2-ATP, and pH 7.3 (adjusted with KOH); the bath solution contained (in mM) 120 NaCl, 5 KCl, 1.5 CaCl2, 1 MgCl2, 10 HEPES, 10 glucose, and pH 7.4 (adjusted with NaOH). The data were acquired at 20 kHz and low-pass filtered at 5 kHz. During post-analysis, data were further filtered at 200 Hz.
+ Open protocol
+ Expand
9

Isolation and Recording of L-type Ca2+ Currents

Check if the same lab product or an alternative is used in the 5 most similar protocols
In voltage-clamp experiments, Ca2+ currents were recorded using an extracellular solution containing 10 mM CaCl2, 5 mM glucose, 120 mM tetraethylammonium chloride, 10 mM Hepes, 1 mM MgCl2, 0.1 mM ethylene glycol-bis-b-aminoethyl ether-N,N,N',N'-tetraacetic acid (EGTA), pH 7.4. The patch pipette was filled with 130 mM CsCl, 1 mM EGTA, 0.5 mM MgCl2, 10 mM Hepes, pH 7.4. During recordings, the bath contained 2 μM tetrodotoxin, to prevent Na+ current activation. The electrophysiological recordings were carried out at room temperature using the whole-cell configuration of the patch-clamp technique. Stimulation, acquisition, and data analysis were performed with the pCLAMP 9.0 and Clampfit version 10.0 software (Axon Instruments, Burlingame, USA). The linear components of leak and capacitive currents were canceled using the P/N4 method. The patch pipettes had resistances of 3–6 MΩ. To abolish the T-type contribution and select L-type Ca2+ currents, the cells were clamped from the holding potential of −90 to −30 mV for 750 ms, then a ramp was applied from −60 to +60 mV, with 10 mV increments and of 500 ms duration. A sampling interval of 50 kHz (20 μs/point) was used, and the currents were filtered at 2 kHz (Bessel filter).
+ Open protocol
+ Expand
10

Dose-Response Data Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The data were presented as the Mean ± SD. Dosage curves were fitted with pCLAMP 9.0 (Axon Instruments) and software Origin 7.0 (OriginLab, USA). The statistical significance was determined using a t-test when comparing two groups and ANOVA when comparing multiple groups. A value of P < 0.05 was considered statistically significant.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!