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4 protocols using adi spa 880

1

Immunoblotting and Immunofluorescence Protocols

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Primary antibodies for immunoblotting: mouse anti-Ub (FK2; BML-PW8810 and UBCJ2; AB_2935893, Enzo Life Science), mouse anti-DnaK (8E2/2, ADI-SPA- 880, Enzo Life Science), goat anti-GroEL (ABIN6292975, antibodies-online), mouse anti-tubulin (E7, DSHB), rabbit anti-GST (G7781, Sigma) and rat anti-GFP (3H9, Proteintech).
Primary antibodies used for immunofluorescence microscopy: α-Ub (1:400, FK2; BML-PW8810 and UBCJ2; AB_2935893, Enzo Life Science) α-M1 (1:400, 1E3, ZRB2114, Merck) α-K63 (1:400, Apu3, 05–1308, Millipore) and α-LC3 (1:300, CTB-LC3–2-IC, Cosmo Bio,). Anti-Burkholderia antibody was provided by the United States Army Medical Research Institute of Infectious Diseases, an agency of the U.S. Government (“USAMRIID”).
Secondary antibodies used: Thermo Fisher Scientific (1:500, Alexa-conjugated anti-mouse, anti-goat and anti-rabbit antisera) and Dabco (1:5000, HRP-conjugated reagents).
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2

Western Blot Protein Analysis Protocol

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Whole-cell fractions (extracted by sonication or pellets) were dissolved in Laemmli’s sample buffer and boiled for 5 min. The protein samples were loaded onto a 12% SDS-polyacrylamide gel. Proteins were separated on the gel depending on the molecular weights and transferred to a polyvinylidene difluoride membrane. The membrane was blocked with 5% nonfat dry milk in 1× Tris-buffered saline-Tween 20 buffer and probed with anti-FLAG antibody (3:2000 dilution, F1804, Sigma, St. Louis, MO, USA) or anti-DnaK antibody (1:10,000 dilution, ADI-SPA-880, Enzo Life Science, Farmingdale, NY, USA) as primary antibodies. Anti-mouse IgG conjugated to peroxidase (3:5000 dilution, sc-2005, Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used as the secondary antibody in all western blotting experiments. The chemiluminescent signals were developed with a West-Zol plus western blot detection system (Intron Biotechnology, Daejeon, Korea).
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3

Immunoblotting and Immunofluorescence Assay

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The following antibodies were used: rabbit anti-SEPT7 (1:1000 dilution, #18991, IBL), mouse anti-DnaK (1:5000, #ADI-SPA-880, Enzo), mouse anti-GFP (1:4000, #ab1218, abcam), rabbit anti-GBP1 (1:1000 #15303-1-AP, Proteintech), mouse anti-GAPDH (1:1000 or 1:2000, #ab8245, Abcam), goat HRP-conjugated anti-mouse (1:5000 or 1:10,000, #P0260, Dako), goat HRP-conjugated anti-rabbit (1:5000 or 1:10,000, #P0448, Dako), Alexa-555-conjugated anti-rabbit antibody (1:500, #10082602, ThermoFisher Scientific), Alexa-647-conjugated anti-rabbit antibody (1:500, #A27040, ThermoFisher Scientific). The following dyes and drug were used: Hoechst (1:300, #H3570, ThermoFisher Scientific), Alexa-488-conjugated phalloidin (1:300, #A12379, ThermoFisher Scientific), IFNγ (#285-IF, R&D Systems).
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4

Western Blot Analysis of Protein Samples

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Protein samples (purified or interaction complexes) or whole-cell fractions (cell extract after sonication or cell pellets) were dissolved in Laemmli sample buffer and boiled for 5 min. The protein samples loaded onto 12% or 15% SDS-PAGE gels were separated based on molecular weights, and transferred to a polyvinylidene difluoride membrane. The membrane was blocked with 5% nonfat dry milk in 1× Tris-buffered saline-Tween 20 (TBS-T) buffer and probed with anti-FLAG antibody (3:2,000 dilution, F1804; Sigma, St. Louis, MO, USA), anti-His6 antibody (3:2,000 dilution, sc-8036; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-DnaK antibody (1:10,000 dilution, ADI-SPA-880; Enzo Life Science, Farmingdale, NY, USA) or anti-RpoB antibody (1:10,000 dilution, sc-56766; Santa Cruz Biotechnology, Santa Cruz, CA, USA) as primary antibodies. Anti-mouse IgG conjugated with peroxidase (3:5,000 dilution, sc-2005; Santa Cruz Biotechnology) was used as the secondary antibody in all Western blots. The chemiluminescent signals were developed with a West-Zol plus Western blot detection system (Intron Biotechnology, Seoul, South Korea).
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