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2 protocols using symmetric di methyl arginine

1

SILAC-Based Quantitative Profiling of Histone PTMs

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Anti-methyl lysine or tyrosine antibodies (PTM-SCAN antibodies, pan-methyl lysine, mono-methyl arginine, symmetric di-methyl arginine, asymmetric di-methyl arginine, di-methyl lysine, and mono-methyl lysine) were purchased from Cell Signaling Technology (Danvers, MA, USA). The SILAC amino acids L-lysine (13C615N2, Cat# CNLM-291-632) and L-arginine (13C615N4, Cat# CNLM-539-H-1) were purchased from Cambridge Isotope Laboratories Inc., Cambridge, MA, USA. Trypsin treated with TPCK was obtained from Worthington Biochemical Co. (Lakewood, NJ, USA). Regular DMEM and DMEM deficient in L-lysine or L-arginine were obtained from Thermo Scientific. Fetal bovine serum (FBS), antibiotics, and phosphate-buffered saline (PBS, pH7.4) were obtained from Invitrogen (Carlsbad, CA, USA). Iodoacetamide and DL-dithiothreitol were purchased from Sigma–Aldrich (Burlignton, MA, USA).
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2

Profiling Histone Modifications by Western Blot

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Protein samples were separated by electrophoresis on denaturing 4–12% premade polyacrylamide gels (Invitrogen) and blotted to PVDF membranes (Millipore). Membranes were blocked in TBST buffer plus 5% milk. Major antibodies: H3K27me3 (Cell Signaling, 9733), H3K27me2 (Millipore 07–452) and H3K27me1 (Millipore, 07–448), H3R8me2s (Epigentek A-3706–050), PRMT5 (Millipore 07–405), EZH2 (Cell Signaling 5246), Symmetric Di-methyl Arginine (Cell Signaling 13222), UTX (Cell Signaling 33510), EED (Millipore, 09–774), RBBP4 (Bethyl Laboratories A301–206A-T) and SUZ12 (Cell Signaling 1335947).
Histones were purified from mouse BM cells using Histone Extraction Kit (Active Motif, 40028) as per manufacturer's instructions. Successful purification of histones was confirmed by Coomassie staining before they were used for western blotting.
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