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8 protocols using ez gel imager

1

Protein Quantification and Western Blot Analysis

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The proteins were extracted to determine the concentration as per the instructions of a bicinchoninic acid kit (Thermo Scientific Pierce, Rockford, IL, USA). The extracted proteins were boiled and run on sodium dodecyl sulfate polyacrylamide gel electrophoresis from 80 to 120 v. Afterwards, the proteins were transferred into the polyvinylidene fluoride membranes (Millipore Corp., Billerica, MA, USA). The membranes were blocked and incubated with primary antibodies at 4°C overnight: SOCS5 (1:1000, ab97283, Abcam), Janus kinase 1 (JAK1, 1:1000, ab47435, Abcam), p-JAK1 (1:1000, ab138005, Abcam), signal transducer and activator of transcription 3 (STAT3, 1:5000, ab119352, Abcam) and p-STAT3 (1:2000, ab76315, Abcam). Then the membrane was rinsed in tris-buffered saline tween (TBST), and cultured for 1 h with secondary antibody (ZSGB-BIO, Beijing, China) labeled by horseradish peroxidase. After TBST washing, the proteins were visualized by enhanced chemiluminescence reagent and developed by Gel EZ imager (Bio-Rad Laboratories, CA, USA). Finally, the target bands were analyzed with Image J software (National Institutes of Health, Bethesda, Maryland, USA) for gray value analysis.
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2

Western Blot Protein Expression Analysis

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The proteins in each group were extracted, and the concentration was determined as per the instructions of bicinchoninic acid kit (Thermo Scientific Pierce, Rockford, IL, USA). The extracted proteins were boiled at 95°C for 10 mins, and 30 μg of each protein sample was run on 10% w/v sodium dodecyl sulfate polyacrylamide gel electrophoresis from 80 v to 120 v. Afterwards, proteins were transferred into the PVDF membranes by wet transfer method at 100 mv for 45–70 mins. The membranes were sealed in 5% bovine serum albumin at room temperature for 1 hr, and incubated with primary antibodies at 4°C overnight: E2F2 (1:1000, ab235837) and β-actin (1:1500, ab8227) (both from Abcam Inc., Cambridge, MA, USA). Then, the membranes were washed in tris-buffered saline tween (TBST) 3 times, and incubated with secondary antibody labeled by horseradish peroxidase for 1 hr at room temperature. After TBST washing, proteins were visualized by enhanced chemiluminescence reagent and developed by Gel EZ imager (Bio-Rad Laboratories, CA, USA). The target band was analyzed using Image J software (National Institutes of Health, Bethesda, MD, USA).
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3

Quantification of p-TRPV1 in H9c2 Cells

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Assaying total protein from H9c2 cells using bicinchoninic acid assay (Thermo Fisher) measured the total protein concentration. Proteins were mixed with a sample buffer and boiled at 95 °C for 10 min. The protein (30 μg) was then separated by 10 % (w/v) electrophoresis and transferred to a PVDF membrane, followed by incubation with 5 % BSA for 1h and culture with primary antibodies p-TRPV1 (1:1000, AF8520, Affinity Biosciences) and GAPDH (1:1000, ab8245, Abcam) at 4 °C overnight. After TBST washing, the membrane was incubated with a secondary antibody for 1h, rinsed with TBST, and developed by enhanced chemiluminescence. Band signals were visualized by Bio-Rad Gel EZ imager (Bio-Rad, USA) and analyzed by Image J software to measure gray values.
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4

Quantitative Western Blot Analysis of Myocardial Proteins

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The total protein content from myocardial tissue or cells was extracted for measurement of protein concentration using the bicinchoninic acid assay (ThermoFisher). The extracted protein was added into the loading buffer and boiled at 95 °C for 10 min. Next, the protein sample (30 μg) was separated by 10% (w/v) electrophpresis and transferred onto polyvinylidene difluoride membranes. The membranes were blocked using 5% BSA for 1 h and cultured with the primary antibodies at 4 °C overnight. After being washed by tris buffered saline tween (TBST), the membranes were incubated with secondary antibody for 1 h and then washed by TBST before enhanced chemiluminescence developing and visualization using Bio-Rad GelEZ imager (Bio-Rad, Inc., Hercules, CA, USA). Image J software (National Institutes of Health, Bethesda, Maryland, USA) was utilized to analyze the gray value of target bands. The antibodies used were IP3R1 (1:2000, ab264281, Abcam), IgG (1:2000, ab205718, Abcam), NLRP3 (1:1000, ab263899, Abcam), ASC (1:1000, ab175449, Abcam), GSDMD (1:2000, ab219800, Abcam), GAPDH (1:1000, ab8245, Abcam), and ERP44 (1:1000, #3798, Cell Signaling Technology, Danvers, MA, USA).
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5

Protein Profiling of Nanoparticles in Plasma

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Particles were incubated in human plasma (1.83E7/mL) or buffer for 1 hour at 37°C, as done previously.[34 (link)] Then, particles were washed 3x in PBS −/− and resuspended in 50uL SDS stain (Pierce SDS-PAGE Sample Prep Kit). Particles were placed in a Bio-Rad T100 Thermal Cycler and boiled to strip proteins from the particle surface. Particles were then centrifuged and the supernatant solution was run on a Novex WedgeWell 4-20% Tris-Glycine Gel alongside a protein ladder. Gels were then stained using EasyBlue Safe Stain, and destained by shaking overnight in deionized water. Images were taken using a Bio-Rad EZ Gel Imager. Specific bands were cut out, digested, and analyzed via LCMS at the University of Michigan proteomics core.
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6

Western Blot Analysis of APOA1

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Native gels that were not silver stained were submitted for Western blot analysis. The gels were transferred using iBlot dry transfer (Thermo Fisher Scientific, Waltham, MA) at 25 V for 6 min. The membranes were then incubated in water at 4 °C until ready to block. Blocking was done using a solution of 5% goat serum (MP biomedicals, Hyderabad, India) in 0.5% Tween 20 tris-buffered saline (TBS-T) for 1 h at room temperature. Rabbit anti-APOA1 (ab52945, Abcam, Cambridge, UK) was used as the primary antibody and was added to the 5% goat serum in TBS-T solution at 1/5000; the membrane was left to incubate with the primary antibody overnight at 4 °C. Following primary incubation, the membranes were washed with TBS-T 3 times for 5 min each. The membranes were then blocked with a secondary goat anti-rabbit antibody at 1/10000 for 2 h at room temperature. Following secondary incubation, the membranes were again washed with TBS-T 3 times for 5 min. Luminata Crescendo HRP (Merk, Burlington, Massachusetts) substrate was then used to incubate the membrane for ~2 min, and the membrane was then analyzed using an EZ Gel Imager (BioRad, Hercules, CA). The membrane was analyzed with the Chemi HiResolution protocol, with images taken every 10 s for 10 contiguous minutes.
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7

Efficient Plant Nucleic Acid Extraction

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Total nucleic acids were extracted using the modified CTAB procedure described by Abarshi et al. [16 (link)]. Approximately 100 mg of leaf material was grounded in 1 mL CTAB buffer and 600 μL of the extract was transferred into a 1.5-ml tube and incubated at 60 °C for 10 min. Equal volume of phenol:chloroform: isoamyl alcohol (25:24:1) was added to the extract and then centrifuged at 12,000 g for 10 min. The supernatant was transferred to a new 1.5 ml tube, to which 300 μL of ice-cold iso-propanol was added and incubated at −20 °C for 60 min and then tubes were centrifuged at 12,000 g for 10 min to precipitate nucleic acids. The precipitated pellet was washed with 0.5 mL of 70% (v/v) ethanol, centrifuged for 5 min, and the pellet was air-dried at room temperature. The final pellet was suspended in 50 μL of sterile distilled water and stored at −20 °C until used. Total nucleic acid was quantified using a NanoDrop 2000 spectrophotometer (Thermo Scientific, UK) and nucleic acid integrity was analyzed by electrophoresing a 4 μL aliquot on a Tris-Acetate EDTA (TAE) agarose gel (Sigma, France) at 110 V for one h. Gels were stained with 0.5 μg/mL ethidium bromide and visualized under ultraviolet (UV 302 nm) light using a EZ Gel Imager (Bio-Rad, France).
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8

Western Blot Analysis of APOA1

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Native gels that were not silver stained were submitted for Western blot analysis. The gels were transferred using iBlot dry transfer (Thermo Fisher Scientific, Waltham, MA) at 25 V for 6 min. The membranes were then incubated in water at 4 °C until ready to block. Blocking was done using a solution of 5% goat serum (MP biomedicals, Hyderabad, India) in 0.5% Tween 20 tris-buffered saline (TBS-T) for 1 h at room temperature. Rabbit anti-APOA1 (ab52945, Abcam, Cambridge, UK) was used as the primary antibody and was added to the 5% goat serum in TBS-T solution at 1/5000; the membrane was left to incubate with the primary antibody overnight at 4 °C. Following primary incubation, the membranes were washed with TBS-T 3 times for 5 min each. The membranes were then blocked with a secondary goat anti-rabbit antibody at 1/10000 for 2 h at room temperature. Following secondary incubation, the membranes were again washed with TBS-T 3 times for 5 min. Luminata Crescendo HRP (Merk, Burlington, Massachusetts) substrate was then used to incubate the membrane for ~2 min, and the membrane was then analyzed using an EZ Gel Imager (BioRad, Hercules, CA). The membrane was analyzed with the Chemi HiResolution protocol, with images taken every 10 s for 10 contiguous minutes.
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