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Zeb1 antibody

Manufactured by Abcam

The ZEB1 antibody is a tool used in research to detect the presence and measure the levels of the ZEB1 protein in biological samples. ZEB1 is a transcription factor that plays a role in the regulation of gene expression. The antibody specifically binds to ZEB1, allowing researchers to study its expression and function in various biological systems.

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3 protocols using zeb1 antibody

1

Protein Separation and Analysis

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The newly added protease inhibitor and the lysis buffer (SDS) were applied for protein separation. Subsequent to separation through SDS-PAGE, the lysates were transferred onto a polyvinylidene fluoride membrane acquired from Roche. Then the membrane was blocked with 2% BSA, followed by incubation with anti-CD63 and anti-TSG 101 from Santa Cruz, and anti-Alix, ZEB1 antibody, MTOR antibody, DNMT3A antibody and GAPDH antibody from Abcam at 4°C overnight. Then the membrane underwent incubation with the proper secondary antibodies, and the protein expression in cells was measured with GAPDH as an internal reference.
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2

Immunohistochemical Staining of ZEB-1 and E-cadherin

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The streptavidin–biotin–peroxidase immunohistochemical staining method was used in this study. Four-micrometer sections of formalin-fixed paraffin-embedded tissue were mounted on poly-L-lysine-coated slides. The slides were deparaffinized, and then endogenous peroxidase activity was blocked with 3% hydrogen peroxide in 50% methanol for 10 min at room temperature. The slides were rehydrated and washed with phosphate-buffered saline (PBS) and then pretreated with citrate buffer (0.01 M citric acid, pH 6.0) for 20 min at 100°C in a microwave oven. After nonspecific binding sites were blocked by incubating in 2% normal goat serum in PBS for 15 min at 37°C, the slides were incubated overnight at 4°C with the primary rabbit ZEB-1 antibody (dilution 1:100; Abcam) and rabbit E-cadherin antibody (dilution 1:200; Abcam). The slides were washed with PBS and incubated with biotin-labeled secondary antibody (dilution 1:100; Zhongshan Biotechnology) for 1 hour at 37°C and then incubated with avidin–biotin-conjugated peroxidase and diaminobenzidine (Zhongshan Biotechnology), and counterstained with hematoxylin. Slides were dehydrated with different concentrations of alcohol and soaked in xylene, and then mounted with neutral balsam and visualized using light microscope.
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3

Analyzing Transcription Factor Binding

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Complementary DNA oligonucleotides (25 bp) centered on variant rs4810856 alleles were synthesized by Takara (Japan) and labeled with biotin at the 3’ end (Supplementary Data 5). Nuclear extracts of SW480 and HCT116 cells were prepared using Nuclear and Cytoplasmic Protein Extraction Kit (Beyotime, Shanghai, China). EMSA was performed with an EMSA/Gel-Shift Kit (Beyotime, China) under the manufacturer’s instructions. Additionally, for the competitive binding assay, unlabeled probes were added to the reaction mixtures at a 10-fold or 100-fold excess compared to that of the labeled probes and incubated for 20 min prior to the addition of labeled probes. For super-shift EMSA, 0.1 μg, 0.2 μg and 0.4 μg of ZEB1 antibody (Abcam, ab155249) was added and incubated with the reaction mixtures for 20 min before the addition of labeled probes. The binding products were detected by streptavidin-horseradish peroxidase conjugate according to a SuperSignal West Femto Trial Kit (Thermo Fisher Scientific, USA).
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