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39 protocols using eribulin

1

Characterization of TNBC Cell Lines

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Three TNBC cell lines (MDA-MB-231, Hs578T, and MDA-MB-157) and MCF7, which is an ER-positive breast cancer cell line, were purchased from the American Type Cell Collection (Manassas, VA) in 2017 and passaged in our laboratory. All cell lines were tested monthly for mycoplasma contamination using the MycoAlert mycoplasma detection kit (Lonza Walkersville, Inc, Walkersville, MD) and were cultured for no more than 20 passages from the validated stocks. All cell lines were cultured in RPMI with 10% FBS at 37.0 °C with 5% CO 2 . Eribulin-resistant TNBC cells were previously established in our laboratory [30] .
Eribulin was purchased from Eisai Co., Ltd. (Tokyo, Japan). Vorinostat was purchased from Sigma-Aldrich (Saint Louis, MO) and ricolinostat was purchased from Sellek Chemicals (Houston, TX).
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2

TNBC Cell Lines and Eribulin Resistance

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Three TNBC cell lines (MDA-MB-231, Hs578T, and MDA-MB-157) were purchased from the American Type Cell Collection (Manassas, VA), and Mx-1 cells were purchased from CLS Cell Lines Service (Eppelheim, Germany) in 2016, and passaged in our laboratory for less than 6 months after receipt or resuscitation. All cell lines were tested monthly for mycoplasma contamination using the MycoAlert mycoplasma detection kit (Lonza Walkersville, Inc, Walkersville, MD) and were cultured for no more than 20 passages from the validated stocks. All cell lines were cultured in RPMI with 10% FBS at 37.0° C and 5% CO2. Eribulin-resistant MDA-MB-231 and Hs578T cells were previously established in our laboratory [23 (link)].
Eribulin was purchased from Eisai Co., Ltd. (Tokyo, Japan). Paclitaxel for in vitro use was purchased from Sigma-Aldrich (Saint Louis, MO) and for in vivo use was purchased from Nippon Kayaku Co., Ltd. (Tokyo, Japan). Recombinant human TGF-β1 (TGF-β) was purchased from R&D Systems (Minneapolis, MN). TGF-β receptor I kinase inhibitor (LY2157299) was purchased from Sellek Chemicals (Houston, TX).
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3

Characterization of TNBC Cell Lines

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Three TNBC cell lines (MDA-MB-231, Hs578T, and MDA-MB-157) and MCF7, which is an ER-positive breast cancer cell line, were purchased from the American Type Cell Collection (Manassas, VA) in 2017 and passaged in our laboratory. All cell lines were tested monthly for mycoplasma contamination using the MycoAlert mycoplasma detection kit (Lonza Walkersville, Inc, Walkersville, MD) and were cultured for no more than 20 passages from the validated stocks. All cell lines were cultured in RPMI with 10% FBS at 37.0 °C with 5% CO 2 . Eribulin-resistant TNBC cells were previously established in our laboratory [30] .
Eribulin was purchased from Eisai Co., Ltd. (Tokyo, Japan). Vorinostat was purchased from Sigma-Aldrich (Saint Louis, MO) and ricolinostat was purchased from Sellek Chemicals (Houston, TX).
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4

Eribulin Dose-Response Evaluation

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Eribulin (Eisai, Tokyo, Japan) was provided to the PPTP through the Cancer Therapy Evaluation Program (National Cancer Institute). Eribulin was reconstituted in ethanol:water (5:95), diluted with sterile saline, stored for up to 7 days at 4°C, and protected from light. For the evaluation for dose-response, Eribulin was administered at doses of 0.25, 0.5, and 1 mg/kg via intraperitoneal injection on days 1 and 4 of a 21-day cycle, repeated for two cycles. For confirmation of response experiments, Eribulin was administered at 1 mg/kg on days 1 and 4 of a 21-day cycle, repeated for two cycles.
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5

Cytotoxic Effects of Eribulin and Gemcitabine

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IC50 concentrations, which induced 50% cell death, were calculated for eribulin (kindly provided by Eisai Inc. (Tokyo, Japan)) and gemcitabine hydrochloride (Sigma Aldrich) in all cell lines. DMSO was used as a drug vehicle and negative control. SK-UT-1 (2 × 103), CP0024 (2.5 × 103), 93T449, and 94T778 (3 × 103) cells were seeded in 96-well plates and treated for 72 h (h) with drug concentrations ranging from 10−7 to 10−11M for eribulin and from 10−6 to 10−10M for gemcitabine. Cell viability was measured using the 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt (MTS) method (Promega; Madison, WI, USA), recording absorbance at 490 nm in an iMarkTM microplate absorbance reader (Bio-Rad, Hercules, CA, USA) spectrophotometer. Data were analysed using Prism 6.0 (GraphPad; San Diego, CA, USA).
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Breast Cancer Cell Line Culture

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The human breast cancer cell lines MDA‐MB‐231 (HLA‐A*02:01) and MCF7 (HLA‐A*02:01) were purchased from the American Type Culture Collection (Manassas, VA, USA). MDA‐MB‐231 cells were cultured in Roswell Park Memorial Institute‐1640 medium (Sigma‐Aldrich), and MCF7 cells were cultured in Dulbecco's modified Eagle's medium (Sigma‐Aldrich) supplemented with 10% fetal calf serum at 37°C in 5% CO2. Eribulin was purchased from Eisai Co. and paclitaxel was purchased from Bristol Myers Squibb.
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7

Iron-Chelation Agents Procurement

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Deferoxamine (DFO), an iron-chelating agent, was purchased from Novartis (Basel, Switzerland). Deferasirox, an another iron-chelator, was purchased from Novartis Pharma (Basel, Switzerland). Eribulin was provided by Eisai Co. (Tokyo, Japan).
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8

Gastric Cancer Cell Line Characterization

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The human gastric cancer cell lines MKN1 (RRID, CVCL_1415), MKN74 (CVCL_2791), MKN45 (CVCL_0434), and NUGC3 (CVCL_1612), as well as HeLa cervical carcinoma cells (CVCL_0030), were obtained from the JCRB cell bank. The human gastric cancer cell lines SNU1 (CVCL_0099), Hs746T (CVCL_0333), and NCI‐N87 (CVCL_1603) were from American Type Culture Collection and SNU216 (CVCL_3946) was from the Korean Cell Line Bank. The cells were maintained under a humidified atmosphere of 5% CO2 at 37°C in RPMI 1640 medium (Sigma‐Aldrich) supplemented with 10% heat‐inactivated fetal bovine serum (FBS) (Biowest) and 1% penicillin‐streptomycin‐amphotericin B (Wako). Cells were tested for mycoplasma contamination using MycoAlert (LT07, Lonza) and were confirmed negative. Eribulin was obtained from Eisai Co. Ltd and Oxaliplatin from Yakult. MORAb‐202 and farletuzumab were provided by Eisai Co. Ltd. MG132 was obtained from Funakoshi.
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9

Palbociclib-Resistant Breast Cancer Cell Lines

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MCF7 and T47D cells were purchased from the American Type Cell Collection (Manassas, VA, USA). Palbociclib-resistant sublines were established via continuous exposure to a constant concentration of Palbociclib for more than 6 months as described in the Supplementary Methods. Three representative clones (MCF7-P1, MCF7-P2, and T47D-PR) were used in this study. Eribulin was provided by Eisai Co., Ltd. (Tokyo, Japan). Abemaciclib, dinaciclib, and everolimus were purchased from Selleck Biotech Co., Ltd. (Tokyo, Japan). Palbociclib, paclitaxel, doxorubicin, and fluorouracil were purchased from Sigma-Aldrich (Saint Louis, MO, USA). This study was approved by the Medical Ethics Committee on Clinical Investigation of Shinshu University (No. 341).
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10

Eribulin-Induced Cytoskeletal Disruption

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Eribulin was obtained from Eisai Co. Ltd. (Tokyo, Japan) through a Material Transfer Agreement. Anti-α-tubulin (DM1A, ab7291), anti-pericentrin (ab4448), and anti-Tyr397-phosphorylated FAK (p-FAK, EP2160Y, ab81298), Goat Anti-Mouse IgG (Alexa Fluor® 488, ab150113), Donkey Anti-Rabbit IgG (Alexa Fluor® 555, ab150062), and Donkey Anti-Mouse IgG (Alexa Fluor® 555, ab150110) were purchased from Abcam (Cambridge, UK). Anti-Vinculin (hVIN-1, NB600-1293) was purchased from Novus Biologicals (Littleton, CO, USA). Anti-APC (F-3, sc-9998) and anti-GAPDH (sc-32233) were purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Anti-FAK (#3285) was purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). Hoechst33342 was purchased from Invitrogen (Carlsbad, CA, USA). Rhodamine-Phalloidin (PHDR1) was purchased from Cytoskeleton, Inc. (Denver, CO, USA). Fibronectin solution (C-43050) was purchased from PromoCell GmbH (Heidelberg, Germany). Horseradish peroxidase (HRP)-anti-mouse IgG and HRP-anti-rabbit IgG were purchased from Jackson ImmunoResearch (West Grove, PA, USA).
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