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4 protocols using tubastatin

1

Diverse Cell Lines Treated with Pharmacological Inhibitors

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Human embryonic kidney cells, HEK293T, human cervical carcinoma cells, HeLa, human breast cancer cells, MDA-MB 231, human lung adenocarcinoma cellsA549, chronic myeloid leukemia cells, K562, and human colon cancer cells, HCT11, were obtained from National Centre for Cell Sciences (NCCS), Pune, India. Cell line authentication by STR analysis was performed for 10 genetic loci for all the cell lines by Life code, Genomic technologies Pvt. Ltd., and tested for mycoplasma negative by performing PCR (mycoplasma specific genes) using EZdetect PCR kit for mycoplasma detection (CCK009). All the cells were cultured in high glucose DMEM medium containing 10% foetal bovine serum and 1% Penicillin/streptomycin (Himedia). Cells were seeded in 60 mm dishes and upon attaining 80–90% confluency, treatment was given with PCI-34051(Cayman Chemicals) (10 μM/20 μM) [12 (link)] and tubastatin (5 μM) for 24 h [12 (link)] or both in combination (PCI-34051 and tubastatin) and Forskolin (Sigma) (10 μM) for 45 min independently along with untreated control as described earlier [13 (link)].
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Comprehensive Fibrosis Evaluation Protocol

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Tubacin, Tubastatin, and MC1568 were purchased from Sigma-Aldrich (St.Louis, MO). ACY1215 was purchased from ChemieTek (Indianapolis, IN). Human recombinant TGF-β1 was purchased from R&D systems (Minneapolis, MN). Bleomycin was purchased from TEVA Pharmaceutical Industries (Petach Tikva, Israel). The following primary antibodies were purchased from the following companies: Santa Cruz (Dallas, TX; HDAC6 [H-300], HIF-1α), Abcam (Cambridge, MA; type-1 collagen), Sigma-Aldrich (α-SMA, acetylated α-tubulin), Cell Signaling Technology (Danvers, MA; β-actin, Smad2, phosphorylated Smad2, Smad3, phosphorylated Smad3, Akt, phosphorylated Akt (Ser473), PHLPP, Erk, phosphorylated Erk, p38, phosphorylated p38, HDAC6 [for the mouse samples], α-tubulin, LC3B). Secondary antibodies used were anti-mouse or anti-rabbit IgG HRP-linked antibodies (Cell Signaling Technology).
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Osteocyte Mechanosensitivity Modulation

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MLO-Y4 osteocytes were cultured on collagen I-coated dishes in MEMα (Life Technologies) supplemented with 5% fetal bovine serum (FBS), 5% calf serum (CS), and 1% penicillin/streptomycin (P/S) at 37°C and 5% CO2. Osteocytes were seeded at 2800 cells/cm2 for 72 hours before application of fluid flow. MC3T3 osteoblasts were cultured in MEMα supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. Osteoblasts were seeded at 2000 cells/cm2 72 hours before receiving conditioned media. Osteocytes were treated with 10 μM fenoldopam mesylate (Sigma), 5 μM tubastatin (Sigma) – an HDAC6 inhibitor that we have previously reported increases the stiffness of primary cilia to reduce osteocyte mechanosensitivity (39 )–, or vehicle control (<0.1% DMSO) for 16 hours prior to experimentation, as previously performed (30 ).
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4

Epigenetic Modulators Evaluation Protocol

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GSK2801, JQ1, UNC0642, UNC1999, BAY 598, GSK864, GSK484 and Tubastatin were provided by Sigma-Aldrich (St. Louis, MO, USA); TP-472 (Structural Genomics Consortium); 5-Azacytidine and SAHA from Abcam (Cambridge, UK); CN26, CN101, CN133, CN147, and C161 (Hooker laboratory). Unless otherwise indicated, all compounds were dissolved in DMSO.
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