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4 protocols using cpg oligodeoxynucleotides odn

1

Antagonizing TLR9 in NOD Mouse Islets

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Freshly isolated islets from Tlr9+/+ NOD mice (5-week-old females) were cultured overnight with the TLR9 antagonist CpG- oligodeoxynucleotides (ODN) (2088; Invivogen, San Diego, CA, USA) or control CpG-ODN (Invivogen), both at 10 μg/ml. After extensive washing, a single-cell suspension was prepared as described earlier and stained with fluorochrome-conjugated monoclonal antibodies to CD45, CD140a and FluoZin-3-AM before analysis by flow cytometry. Another set of freshly isolated islets from Tlr9+/+ NOD mice was used for insulin release assay, after overnight culture in the presence of the TLR9 antagonist CpG-ODN or control CpG-ODN.
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2

Isolation and Culture of Bone Marrow Macrophages

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Isolation and culture of primary bone marrow cells were performed, as previously described [36 (link),37 (link)]. Briefly, bone marrow cells were isolated from the long bones of 16-week-old female mice and cultured on Petri dishes for 2 h at 37 °C under 5% CO2. Non-adherent bone marrow cells were re-seeded on culture plates at a density of 1 × 106 cells/mL and then incubated for 2 days in α-minimum essential medium (α-MEM) containing 10% heat-inactivated FBS and 25 ng/mL recombinant mouse macrophage colony-stimulating factor (M-CSF; PeproTech). After the 2-day pre-culture, the yielded bone marrow-derived macrophages were stimulated with Toll-like receptors ligands, such as lipopolysaccharide (LPS, Sigma-Aldrich), polyinosinic-polycytidylic acid sodium salt (Poly(I:C)), single-strand RNA (ssRNA), and CpG oligodeoxynucleotides (ODN, all from InvivoGen, San Diego, CA, USA), for 6 h in the presence of M-CSF. RNA samples were isolated from bone marrow-derived macrophages at the indicated time points and subjected to gene expression analysis.
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3

Macrophage Differentiation and TLR-9 Effects

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As for differentiation of Raw264.7 mouse macrophages, Raw264.7 were stimulated for IL-4 (20 ng/ml, Novoprotein, China) and IL-13 (20 ng/ml, Novoprotein, China) or LPS (250 ng/ml, Sigma) and IFN-γ (20 ng/ml, Sigma) for 24 h. TLR9 antagonist CpG-oligodeoxynucleotides (ODN) (2088; Invivogen, San Diego, CA, United States) or control CpG-ODN (Invivogen) was co-cultured with stimulants to determine the effects of TLR-9 on macrophages.
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4

Analyzing BCR Signaling in B Cells

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Ikaros staining was performed after fixation-permeabilization with the Foxp3 staining buffer set (eBioscience). Analysis of phosphorylated BCR signaling components was performed with mature CD43 B cells from lymph nodes, which were enriched by immunomagnetic depletion with CD43-MicroBeads (Milteny Biotec), followed by resuspension in RPMI-1640 medium (Gibco) and stimulation for 5 min at 37 °C with 10 μg/ml anti-mouse IgM (II/41) or for indicated time points with 1 μg/ml CpG oligodeoxynucleotides (ODN1826, InvivoGen). The stimulated cells were mixed with an equal volume of Fixation buffer (BD Cytofix) and fixed for 15 min at 37 °C. Cells were washed with Perm/Wash Buffer I (BD Phosflow) and stained in this buffer with antibodies detecting phosphorylated BCR signaling components or IκBα for at least 1 h at 23 °C at the dilution recommended by the manufacturer. The Ikaros-, IκBα- and phospho-specific antibodies used are described under ‘Antibodies’.
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