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34 protocols using high glucose dmem

1

Characterization of Human NHL Cell Lines

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Human NHL cell lines (Raji, Jeko1, Farage, Daudi, Ramos, Namalwa), lymphoblastic leukemia cell line Nalm6, and 293T were maintained in Hematological Laboratory of Zhujiang Hospital (Southern Medical University, China) and genotyped to verify their identity. All cell lines were acquired from the American Type Culture Collection or Deutsche SammLung von Mikroorganismen und Zellkulturen. Cell lines were identified by short tandem repeat (STR) profiling and confirmed to be mycoplasma-free immediately before use. Cells over passage 15 were not used. 293T cells were maintained in high-glucose DMEM (BIOLOGICAL INDUSTRIES, Israel) supplemented with 10% fetal bovine serum (FBS, Moregate, Australia). Other cell lines were cultured in RPMI-1640 media (VivaCell, Shanghai, China) supplemented with 10% FBS. Raji cells transduced with luciferase were used in in vivo experiments as indicated.
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2

3T3-L1 Preadipocyte Assay Protocol

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3T3-L1 mouse preadipocytes were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). High glucose DMEM, low glucose DMEM, Pen-Strep solution (P/S), insulin, certified fetal bovine serum (FBS), special newborn calf serum (NBCS), and phosphate buffered saline (PBS) were purchased from Biological Industries (Shanghai, China). The glucose test kit was purchased from Rongsheng Biotech Co., Ltd. (Shanghai, China). α-Glucosidase (solid), 3,5-dinitrosalicylic acid, p-nitrophenyl α-D-glucopyranoside (PNPG), and ascorbic acid were purchased from Yuanye Biotech Co., Ltd. (Shanghai, China). Acarbose and rutin were obtained from Solarbio (Beijing, China). CellTiter 96® AQueous One Solution Reagent (Promega Corporation, Madison, WI, USA). DPPH, ABTS, and FRAP detection reagents were purchased from Suzhou Comin Biotechnology Co., Ltd. (Jiangsu, China). Sodium nitrite, aluminum nitrate, sodium carbonate, and sodium hydroxide were purchased from MACKLIN (Shanghai, China).
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Primary Fibroblast Culture and Characterization

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Previously established skin primary fibroblast cultures from the patient (with informed consent; all experimental protocols were approved by Hadassah Medical Center IRB #0485-09 and all methods were carried out in accordance with relevant guidelines and regulations) (7); Human foreskin fibroblasts (HFF-1) (ATCC, Manassas, VA, USA); and HEK293 (Invitrogen, Carlsbad, CA, USA) cell lines were maintained in high-glucose DMEM supplemented with 15% fetal bovine serum, L-glutamine, pyruvate, and 50 µg/mL uridine (Biological Industries, Beit Ha’emek, Israel). For immunocytochemistry, cells were seeded on u-slide 8-well ibiTreat sterile tissue culture slides (NBT; New Biotechnology Ltd., Jerusalem, Israel). For RNA analysis, cells were grown in 6-well plates. For DSB staining and proliferation assays, cells were seeded on u-slide 8-well ibiTreat sterile tissue culture slides. All cells were incubated at 37 °C in an atmosphere of 5% CO2 and 19.3% O2 (considering the atmospheric pressure at 750 m elevation). Cells from passages 7 or lower were used for the experiments. Viability was assessed by trypan blue staining.
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4

Chicken Myoblast Isolation and Differentiation

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As previously mentioned, we also isolated chicken primary myoblasts from the leg muscle of 11-day-old AA broiler embryos [31 (link)]. The cells were grown in high-glucose DMEM (Biological Industries, Beit Haemek, Israel) containing 15% FBS and 1% penicillin/streptomycin (Solarbio, Beijing, China) until the second generation of cells had reached >90% confluence and then changed to differentiation medium (DMEM containing 2% horse serum) for further culture. An inverted microscope was used to observe the cell status. Cells were maintained at 37 °C in a 5% CO2 environment, and cell samples were collected at 1, 2, 3, 4, 5, 6, and 7 days of differentiation induction.
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5

Colorectal Cancer Cell Lines and Colon Epithelial Cell Culture

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The colorectal adenocarcinoma cell lines WiDr and C2BBe1 were obtained from BCRC (Bioresource Collection and Research Center, Food Industry Research and Development Institute, Taiwan). STR profile performed from BCRC. The human normal colon epithelial cell line CCD841 CoN was obtained from American Type Culture Collection (ATCC). STR profile performed from ATCC The MSCs were obtained as a gift from Dr. Chao-Ling Yao (National Cheng Kung University).
The WiDr cells were cultured in a medium containing minimum essential medium (MEM)-EAGLE Earle’s Salts Base (Biological Industries), penicillin (Hyclone), sodium pyruvate (PanReac AppliChem), and 10% fetal bovine serum (FBS; PEAK SERUM). The C2BBe1 cells were cultured in high-glucose DMEM (Biological Industries) with penicillin, sodium pyruvate, 10% FBS, and 0.01 mg/mL human transferrin (Sigma-Aldrich). The CCD841 CoN cells were cultured in ATCC-formulated Eagle’s MEM with 10% FBS. All the aforementioned cells were incubated at 37 °C in a humidified atmosphere with 5% CO2.
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6

Cell Line Cultures and Mouse Models

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The human embryonic kidney epithelial HEK-293T cells and diploid lung IMR90 fibroblasts were purchased directly from the American Type Culture Collection (ATCC). The human cancer cell lines, including osteosarcoma U2OS cells, cervix carcinoma HeLa cells, prostate carcinoma DU-145 cells, and non-cancerous telomerase-immortalized foreskin BJ1 fibroblasts (BJ1-hTERT) were generously provided by Prof. Yosef Shiloh. Breast carcinoma MDA-MB-468 cells were a gift from Prof. Izhak Haviv. All cell lines, except for the IMR90 cells, were cultured in high glucose DMEM (Biological Industries, Beit-Haemek, Israel) supplemented with 2 mM L-glutamine, 10% (v/v) fetal bovine serum, and 1% (v/v) penicillin–streptomycin [34 (link),36 (link),37 (link),38 (link)]. IMR90 cells were grown in RPMI 1640 medium (Biological Industries) supplemented with 2 mM L-glutamine, 15% (v/v) fetal bovine serum, and 1% (v/v) penicillin–streptomycin.
The proteasomal inhibitor MG-132 and deubiquitinase (DUB) inhibitor N-ethylmaleimide (NEM) were purchased from Merck.
Smurf2-ablated (Smurf2KO) and wild-type control C57BL/B6 mice were housed at the SPF animal facility according to the FELASA guidelines and an experimental protocol approved by the Animal Care and Use Committee of Bar-Ilan University (BIU).
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7

Culturing Hepatoma and Hepatocyte Cells

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All cell lines were obtained from the Shanghai Institute for Biological Sciences (Shanghai, China). The human hepatoma cell lines (HCCL-M3, MHCC-97h, Huh7, SMMC-7721, HepG2, and HepG1), and the immortalized normal hepatocyte cell line (LO2) were cultured in high glucose DMEM (Biological Industries, Cronwell, CT, United States) supplemented with 10% fetal bovine serum (FBS; Biological Industries, Cronwell, CT, United States). All media were supplemented with 100 U/ml penicillin and 100 μg/ml streptomycin (GibcoTM, Thermo Fisher Scientific, Waltham, MA, United States) and incubated at 37°C in a humidified chamber containing 5% CO2.
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8

Cell Culture Protocol for HCC and Normal Hepatocyte

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HCC cell lines QGY‐7703, QGY‐7701, SMMC‐7721, and the normal hepatocyte cells HL‐7702 were purchased from Shanghai Institutes for Biological Sciences (China) and cultured in RPMI‐1640 medium (Biological Industries, USA) supplemented with 10% fetal bovine serum (Biological Industries, USA). HepG2 cells were maintained in high glucose DMEM (Biological Industries, USA). All the media were supplemented with 100μg/ml streptomycin and 100 U/ml penicillin (GibcoTM, Thermo Fisher Scientific, USA), and all cells were incubated at 37°C, 5% CO2.
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9

Maintenance and Manipulation of Human Cell Lines

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Human U2OS cells were maintained in low glucose DMEM (Biological Industries, Beit-Haemek, Israel), supplemented with 10% fetal bovine serum (HyClone Laboratories, Logan, UT), 1% Glutamine (Biological Industries, Beit Haemek, Israel), and 1% penicillin–streptomycin solution (Biological Industries). MCF7 and HeLa cells were maintained in high glucose DMEM (Biological Industries), supplemented with 10% fetal bovine serum and 1% penicillin–streptomycin solution. All cells were grown at 37 °C in 5% CO2. The GFP-dystrophin-MS2 U2OS cell line22 (link) was selected using 165 μg/μl hygromycin (Sigma-Aldrich) and activated using Ponasterone A (PonA) at 5 μg/μl for 24 h (unless otherwise specified). Hyper-osmolarity treatment was performed with 1:100 10XPBS for 10 min. ATP depletion was performed using either 2-deoxy-d-glucose (20 mM, Sigma) or Na-azide (20 mM, Sigma) in medium for either 15 min or 1 h. Hoechst 33342 (2.5 μM) was used for labeling DNA. Puromycin (Invivogen) was used at a concentration of 10 μg/ml for 30 min in medium. Cycloheximide (Sigma-Aldrich) was used at a concentration of 100 μg/ml for 4 h in medium.
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10

Establishing and Maintaining Fibroblast Cultures

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Previously established skin primary fibroblast cultures from the patient (informed consent was obtained, IRB #0485-09) [4 (link)], controls and human foreskin fibroblasts (HFF-1 ATCC) were maintained in high-glucose DMEM supplemented with 15% fetal bovine serum, L-glutamine, pyruvate and 50 µg/mL uridine (Biological Industries, Beit Ha’emek, Israel). For immunocytochemistry, cells were seeded on µ-slide 8 well ibiTreat sterile tissue culture slides (NBT; New Biotechnology Ltd., Jerusalem, Israel). For Western blotting or RNA analysis, cells were seeded, and grown in tissue culture bottles. For positive hypoxia controls in the immunostaining and Western blotting, cells were preincubated with 500 µL of CoCl2 supplemented with a new fresh medium, for 6 or 24 h, at 37 °C and 5% CO2 [10 (link)]. All the cells were incubated at 37 °C in a humidified 5% CO2 atmosphere.
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