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154 protocols using image pro plus 6

1

Histological Analysis of Harvested Hearts

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Hearts were harvested, weighed, and cut into several pieces, and then, samples were either frozen immediately in liquid nitrogen for further biochemistry detection or fixed in 4% paraformaldehyde for histopathological analysis. For histopathological analysis, after being fixed, dehydrated, and embedded in paraffin blocks, heart samples were cut into thin cross sections at 5 μm. To investigate the pathological morphology of the heart, myocardial fibrosis, and cardiomyocyte size, hematoxylin and eosin (HE) staining, Masson’s trichrome staining, and wheat germ agglutinin (WGA) staining were conducted strictly following manufacturer’s instructions, respectively. All images were obtained by an optical microscope (Olympus, Tokyo, Japan) and analyzed by Image-Pro Plus 6.0 software.
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Histological Analysis of Bone-Implant Interface

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Hard-tissue slicing was utilized for histological and histomorphometric observation and analysis. Briefly, the harvested samples were fixed in 4% PFA for 24 h. Then they were washed in distilled deionized water and then dehydrated in grade ethanol series from 70 to 100%. Subsequently, the samples were embedded in a light-curing one-component resin (Technovit 7200VLC, kulzers, Friedrichsdorf, Germany). After 15 h, the polymerized samples were cut longitudinally into 200-μm-thick sections with a diamond circular saw system (Exakt 300 CL, Exakt Apparatebau, Germany), and then ground and polished to around 30 μm thickness using a grinding system (Exakt 400 CS, Exakt Apparatbau, Germany).
After being stained by Van Gieson’s picrofuchsine, the sections were observed and photographed by a microscope (Olympus, Japan). And Image-Pro Plus 6.0 software was used to perform histomorphometric analysis and compute the bone-implant contact (BIC) percentage in the cancellous bone. BIC was calculated as the percentage of the length of direct contact to the total length of the implant surface.
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3

Visualizing Membrane Dynamics in B. subtilis

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B. subtilis cultures were grown as liquid cultures in appropriate media as described above. To deplete RodZ, the relevant culture was grown in SMM+salts with 1 mM IPTG for 2.5 hours and then diluted into a medium lacking IPTG and incubated at least for an additional ten hours. For membrane visualization, the fluorescent dye FM 4–64 (Molecular Probes) was used at concentrations of 0.2–1 μg ml-1. Cells were examined under the microscope on 1% agarose covered slides. When it was necessary to increase the cell density, cells were concentrated by centrifugation (3 min at 2,300 x g) and resuspended in a small volume of supernatant prior to examination by microscopy. All images were obtained with an Olympus BX63 microscope equipped with a Hamamatsu Orca-R2 camera. Olympus CellP imaging software or Olympus Image-Pro Plus 6.0 software was used for image acquisition and analysis. Line scans were completed using the line scan function in Olympus CellP imaging software. Line scan measurements were exported to Microsoft Excel for display.
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4

Microglial Reactivity Assessment via Immunohistochemistry

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A cerebral block containing the hippocampus and prefrontal cortex was fixed in 10% neutral-buffered formalin overnight and then embedded in paraffin. Coronal 10-μm sections were prepared and subjected to immunohistochemistry staining. First, paraffin sections were dewaxed and placed in EDTA buffer (pH 8.0) to repair antigens. Second, sections were washed in 0.01% Triton X-100 in phosphate-buffered saline (PBS-T) and blocked with 3% bovine serum albumin (BSA) for 30 min at room temperature. Then, they were incubated overnight at 4 °C in the appropriate primary antibody, anti-Iba1 (1:100; WAKO). Next, the sections were incubated with the appropriate secondary antibody, anti-rabbit IgG (1:400; Jackson) for 2 h at room temperature. Glial reactivity is characterized by an increase in the number of cells and an alteration in cell morphology (rounding of the cell bodies and thickening of processes), which leads to an increase in Iba1 (ionized calcium-binding adaptor molecule 1) labelling with increasing glial reactivity. An increase in the integrated intensity/pixel area for Iba1 staining was interpreted to signify microglial reactivity. The number of positively stained microglial cells per view was counted using microscopy at ×200 magnification. Images were captured using the Olympus BX5 imaging system and quantified using Image-Pro Plus 6.0 software.
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5

Wound Healing Assay with TGF-β1 and Vicenin-II

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A549 and H1299 cells (3 × 105 cells/well) were seeded in 6-well plates for 24 h and a clear cell-free line was manually created by scratching the confluent monolayers with a 100 μL pipette tip in each well. The wounded monolayers were washed three times with PBS and photographed using an inverted microscope (Olympus, Hamburg, Germany) as the picture for 0 h. Then, the cells were co-treated with TGF-β1 (5 ng/mL) for 48 h in combination with ViceninII (2.5, 5 and 10 μM) for the last 24 h. TCell migration was captured as images at 48 h. The migration area was counted by Image-Pro Plus 6.0 software (Bethesda, MD, USA).
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6

Cardiac Histopathology and Fibrosis Analysis

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Hearts were immediately excised, weighed, washed in cold phosphate-buffered saline, and cut into several pieces. The left ventricular sections were fixed in 4% paraformaldehyde at room temperature for 24 h. Then, the samples were dehydrated and embedded in paraffin blocks, and cross-sections at 5 μm thick were obtained. For evaluation of heart pathological morphology and myocardial fibrosis, hematoxylin and eosin (H&E) staining and Masson's trichrome staining were conducted following the manufacturer's instructions (Servicebio, Wuhan, China). For evaluation of cardiomyocyte size, paraffin-embedded sections were deparaffinized, rehydrated in xylene and graded ethanol, and then subjected to wheat germ agglutinin (WGA) staining according to the manufacturer's protocol (Servicebio, Wuhan, China). All images were acquired using an optical microscope (Olympus, Tokyo, Japan) and analyzed by Image-Pro Plus 6.0 software.
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7

Apoptosis Assay using Fluorescein

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The cultured cells were prepared and stained according to the manufacturer's instructions, and the apoptotic cells were measured by the Apoptosis Fluorescein Detection Kit (Millipore, USA). Briefly, the cells were washed 3 times with PBS and fixed in 4% paraformaldehyde for 5 minutes. Cells were treated with proteinase K (20 μg/ml) for 20 minutes and incubated with terminal deoxyribonucleotidyl transferase and deoxyuridine triphosphate for 60 minutes. Nuclei were stained with DAPI (Invitrogen, USA). The results were observed using a fluorescence microscope (OLYMPUS, Japan) and calculated using Image-Pro Plus 6.0 software (Maryland, USA).
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8

Western Blot Analysis of Protein Extracts

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Total protein from mice skin tissues or melanocytes was extracted using total protein extraction reagent (Beyotime, Shanghai, China) according to the manufacturer’s instructions, and the concentration was measured using a nucleic acid/protein analyzer. Two hundred micrograms of protein lysate from each sample were size-separated by SDS-PAGE electrophoresis and transferred onto nitrocellulose filter membranes (Boster, Wuhan, China). The membranes were blocked in 5% skimmed milk powder (Boster, Wuhan, China) at room temperature for 1 h and then were probed with the primary antibody diluted in Tris-buffered saline-Tween (TBST) overnight at 4 °C. The next day, the membranes were washed 3 times in TBST for 10 min each and incubated with HRP-conjugated second antibody (1:10,000 (v/v), Boster, Wuhan, China) at 37 °C with horizontal shaking for 1 h. Subsequently, the membranes were washed 6 times in TBST for 5 min each, and the proteins were visualized via a super ECL chemiluminescence solution (Boster, Wuhan, China). The Western blot results were analyzed using Image-ProPlus 6.0 software (Olympus, Hatayaga, Japan) to measure the area and gray value for each target band. The target protein expression level was normalized relative to the corresponding internal reference level in each lane.
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9

Immunofluorescence Staining of CD19+ Cells

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First, the heart sections were washed with PBS, and the primary antibody was diluted in FACS buffer and added into a hydrated chamber (anti-CD19 rabbit pAb [Servicebio]) overnight at 4 °C. Afterwards, sections were washed with PBS and stained with secondary antibody diluted in PBS for 1 h at 4 °C (Cy3 conjugated goat anti-rabbit IgG [Servicebio]). Sections were subsequently washed with PBS and incubated with DAPI solution for 10 min at room temperature. The sections were washed again with PBS, and then spontaneous fluorescence quenching reagent was added and the sections were incubated for 5 min. Finally, the sections were washed in running tap water for 10 min. Immunofluorescence images were obtained under a microscope (Olympus) at 400 times magnification and analysed with Image-Pro Plus 6.0 software.
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10

Boyden Chamber Assay for Cell Migration

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Modified Boyden chamber assays were conducted using 24-well Transwell polyester membrane filter inserts with 8 µm pores and 0.33 cm2 surface area (Corning Inc., Corning, NY, USA) at a density of 500,000 cells/ml per transwell (upper chamber). DMEM medium without FBS in the upper chamber and total DMEM medium with 10% FBS in the bottom chambers of the transwells. After culturing for 24 h, the cells from the upper chambers were removed, and the migrated cells on the undersides of the membranes were stained with crystal violet (Beyotime, Haimen, China). Migratory cells were imaged and counted in high power microscope micro-photographs (field area: 0.98 mm2) taken under bright light (Olympus Tokyo, Japan) using Image Pro Plus 6.0 software (Rockville, MD).
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