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20 protocols using zetaview software

1

Size and Concentration Analysis of sEVs and lEVs

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The size distribution and particle concentration of sEVs and lEVs were measured by nanoparticle tracking analysis (NTA) using the ZetaView instrument (Particle Metrix, Germany). Samples were diluted in PBS at proper ratios and then administered under controlled flow. The size distribution and particle concentration data were given by the ZetaView Software 8.03.04.01 (Particle Metrix, Germany).
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2

Nanoparticle Tracking Analysis of Exosomes

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Exosomes were diluted in PBS and analyzed using nanoparticle tracking analyzer (Particle Metrix, German, ZetaVIEW®). The instrument was equipped with a 405 nm excitation laser and pre-calibrated with a 100 nm PSL reference standard for the concentration of exosomes. All nanoparticle tracking analysis measurements used exactly the same camera settings and identical tracking parameters. The recommended parameters for extracellular vesicle detection are sensitivity of 85, shutter of 70, minimum brightness of 20, minimum size of 10, and maximum size of 200. Videos were captured at 30 frames per second and analyzed for size and concentration by using ZetaVIEW software (Particle Metrix).
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3

Exosome Isolation and Characterization from Gastric Cancer Cells

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Exosomes were extracted from the gastric cancer cell culture media for AGS cells using Total Exosome Isolation Reagent (from cell culture media; Cat # 4478359, Thermo Fisher Scientific, Invitrogen, Waltham, MA, USA). The transfected AGS cells were cultured for 48 h in RPMI1640, without FBS (conditioned medium). The culture media were centrifuged at 2000× g for 30 min at 4 °C to remove cells and cell debris. The supernatant was filtered through a 0.22-µm filter and ultra-filtered to remove apoptotic bodies. The filtered supernatant was ultrafiltered using a 100-kDa cutoff Amicon ultra-15 centrifugal filter (UFC910024; Merck Millipore, Burlington, MA, USA). The ultrafiltration tube was centrifuged at 4000× g for 30 min. A Total Exosome Isolation Reagent (from cell culture media, 4478359; Invitrogen) was added to the ultrafiltered conditioned media. After overnight incubation at 4 °C, the mixture was centrifuged at 10,000× g at 4 °C for 1 h to collect the exosome pellets. The exosome pellets were resuspended in 100 µL of RPMI1640 without FBS.
The exosome pellets were diluted at 1:10,000 with PBS. The exosome size was examined with a nanoparticle tracking video-microscope, ZetaView (Particle Metrix, Inning am Ammersee, Germany), with ZetaView software version 8.05.14 (Particle Metrix).
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4

Isolation and Characterization of Exosomes from Human Amniotic Epithelial Cells

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In brief, a total of 5 × 106 hAECs were cultured in a 100 mm culture dish. After 24 h, the complete culture medium was replaced with 10 mL of serum-free DMEM/F12 medium. After another 24 h, the CM from hAECs was collected and centrifuged at 3,000 g for 15 min to remove the dead cells and cellular debris. The supernatant was filtered through a 0.22 μm filter (Millipore, Billerica, MA, USA). Then, 10 mL supernatant was further concentrated by centrifugation for 30 min at 10,000 g in a pre-rinsed centrifugal filter tube (3 kDa; Amicon Ultra-15; Millipore) to approximately 1 mL. A 1:2 volume of total exosome isolation reagent (Invitrogen, Carlsbad, CA, USA) was added to the concentrated liquid and mixed well by vortexing. After an overnight incubation, the mixture was centrifuged at 10,000 g for 60 min to obtain the pellet. The pellet of exosomes was resuspended in PBS. All procedures were performed at 4°C. The exosomes were stored at −80°C or used for the experiments.
The ultrastructure of the exosomes was analyzed under a transmission electron microscope (Zeiss, Oberkochen, Germany). The protein levels of Alix, CD63, and CD9 (representative markers of exosomes) were detected using western blot. To determine the sizes of the purified vesicles, a nanoparticle tracking analysis (NTA) was performed using Zetaview software (Particle Metrix, Meerbusch, Germany).
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5

Characterization of Extracellular Vesicles by TEM

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The nature of the isolated EVs was confirmed by Transmission Electron Microscopy (TEM). Briefly, EVs were mixed with 4% paraformaldehyde (Sigma Aldrich, St. Louis, MO, USA) for 30 min, counterstained with Alcian blue (Sigma Aldrich) for 30 min, washed with phosphate buffered saline (PBS) four times and centrifuged at 15,000 g for 5 min. EV pellets were fixed in 2% glutaraldehyde for 5 min. Resuspended EV mixtures were transferred to 300-mesh formvar nickel grids and incubated for 40 min. All grids were negatively stained with 4% saturated aqueous uranyl acetate for 15 min and then analyzed using an FEI Tecnai Osiris transmission electron microscope at 200 kV (FEI). All EVs detected were subjected to morphometric analysis and the exosome size and quantification were determined by nanoparticle tracking analysis (NTA) using ZetaView PMX 110 (Particle Metrix, Meerbusch, German). Data analysis was performed using ZetaView software (Particle Metrix, Meerbusch, German).
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6

Exosome size and concentration analysis by NTA

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The size distribution and concentration of exosomes diluted in PBS were analyzed by nanoparticle tracking analysis (NTA) using a ZetaVIEW® instrument (Particle Metrix, Germany). The equipment used a 405 nm excitation laser and was pre-calibrated for concentration using a 100 nm polystyrene latex reference standard (Applied Microspheres, Netherlands). The following parameters were used for the detection of exosomes (sensitivity: 85, shutter: 70, minimum brightness: 20, minimum size: 10, maximum size: 200) and the videos were taken at 30 frames per second. The data were analyzed using ZetaVIEW software (Particle Metrix, Germany).
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7

Exosome Characterization and Quantification

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In brief, isolated exosomes were diluted at 1/5000 with PBS and the instrument was equipped with a 488-nm laser. The particles were captured at 23 °C and the average value counted per frame was approximately 80–300 particles. The exosome diameter (nm) and concentration (particles/mL) were analyzed using a Zetaview software version 8.05.12 (Particle Metrix GmbH, Inning am Ammersee, Germany).
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8

Exosome Particle Size Analysis

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The number and size of particles in the exosome solution (dilution factor: 10,000) were determined at 405 nm with a laser using a ZetaView (PMX120-Z, Particle Metrix, Meerbusch, Germany) according to the manufacturer’s protocol. Photos were taken at a rate of 30 pieces/sec for 1 min. The movement of particles was then analyzed using ZetaView software (Version 8.05; Particle Metrix, Inning, Germany).
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9

Characterizing Extracellular Vesicle Size

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Hydrodynamic particle size of crude EV samples in PBS were measured in triplicate using a Zetasizer Nano-ZS (Malvern Instruments, Malvern Hills, United Kingdom). Particle concentration and size distribution were determined using a ZetaView nanoparticle tracking analysis system (Particle Metrix, Germany) and ZetaView software (version 8.05.11 SP1). Hundred nanometer polystyrene standard particles were used for calibration measurements. For video acquisition: sensitivity=85, shutter speed=100, acquisition=30 frames per second. Each sample was measured at 11 different positions, with 2 cycles of readings at each position. After automated analysis and removal of any outliers from the 11 positions, the size (diameter in nm) and the concentration (particles/mL) were calculated.
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10

NTA Analysis of Small Extracellular Vesicles

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Size distribution and concentration analyses of sEVs were performed using a ZetaView PMX 120-Z NTA instrument (Particle Metrix, Meerbusch, Germany) equipped with a CMOS camera and a 405-nm laser. Samples were diluted in filtered 1× PBS buffer to a concentration between 107 and 108 particles/ml and then injected into the instrument using a 1-ml syringe. Eleven positions with two readings per position were recorded for each sample. Data were analyzed using ZetaView software (Particle Metrix, Meerbusch, Germany), with hydrodynamic diameters of multiple particles being calculated via the Stokes-Einstein equation. The instrument’s default post-acquisition parameter settings with the 5-nm width of the bin class were applied.
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