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51 protocols using es 2030

1

Evaluating Anti-Biofilm Effects of AME/CME on Pneumococcus

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It is reported that S. pneumoniae in vitro biofilms formed on abiotic surfaces for 10–12 h consist of a three-dimensional structures with significant thickness (25–30 μm) (Moscoso et al., 2006 (link)). In this study, we evaluated the effect of AME/CME on 18-h pre-established in vitro biofilm using scanning electron microscope (SEM). In vitro biofilms of S. pneumoniae D-39 were grown as described above for 18 h and treated with indicated concentration of AME/CME solution for 6 h; the control biofilms were treated with PBS. After incubation, the biofilms were washed, pre-fixed by immersion in 2% glutaraldehyde in 0.1 M phosphate buffer, and post-fixed for 2 h in 1% osmic acid dissolved in PBS. The biofilm samples were then treated with increasing concentrations of ethanol (60–95%), followed by t-butyl alcohol. The samples were dried in a freeze dryer (ES-2030, Hitachi, Tokyo, Japan) and coated with platinum using an ion coater (IB-5, Eiko, Kanagawa, Japan). The images were captured under field emission-SEM (FE-SEM; Hitachi, S-4700, Tokyo, Japan).
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2

Cellular Alignment Analysis via SEM

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SEM using (Hitachi S-4800, Tokyo, Japan) was used for the investigations of cellular alignment and morphological variations. After the cells were cultured on the substrates with and without cisplatin concentrations, the 2 hr incubation using 2.5 vol.% glutaraldehyde (Wako, Japan) in PBS was done for fixation and preservation of the cells morphology. Then, stepwise incubations with several of ethanol concentrations (10, 40, 60, 80, and 100%) for 5 min were used for the cell dehydration, respectively. After that, the freeze drying (Hitachi Es 2030, Tokyo, Japan) was done for desiccation of samples. Finally, the cells over nanopatterns were observed at an acceleration voltage in the range 1–5 kV.
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3

Fertilized Egg Envelope Ultrastructure Analysis

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For transmission electron microscope (TEM) observation, first fertilized egg envelopes were pierced a hole with injection needle and fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer (pH 7.4) for 12 h at 4 °C. After prefixation, the specimens were washed twice in the same buffer solution for 20 min. and then postfixed in 1% osmium tetroxide solution in 0.1 M phosphate buffer solution (pH 7.4) for 2 h at room temperature. Specimens were dehydrated in ethanol, cleared in propylene oxide, and embedded in an Epon mixture. Ultrathin sections of embedded fertilized egg envelope were taken with an ultramicrotome (Ultracut E, Reichert-Jung, Austria) at a thickness of about 60 nm. The ultrathin sections were mounted onto copper grids, double stained with uranyl acetate followed by lead citrate, and observed with a transmission electron microscope (JEM-1400, JEOL, Japan).
For scanning electron microscope observation, prefixation, postfixation and dehydration were conducted by following the same procedure as that for TEM. The samples were replaced with tert-butyl alcohol and freeze dried (ES-2030, Hitachi, Japan). The samples were coated with Pt by ion sputter (E-1045, Hitachi, Japan). Subsequently, the fertilized eggs were observed under the table top scanning electron microscope (TM-1000, Hitachi, Japan).
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4

Platelet Aggregation Imaging by SEM

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Samples for observation by scanning electron microscopy were prepared as described previously [16 (link)]. Briefly, washed platelet aggregation was initiated by collagen stimulation for 3 min in the presence or absence of licochalcones, and then fixed overnight with 1% glutaraldehyde. Samples were washed twice with phosphate-buffered saline (PBS) for 5 min. The fixed platelets were dehydrated with increasing concentrations of ethanol (50, 70, 80, 90, and 100%) and t-butyl alcohol. The samples were then freeze-dried (ES-2030, Hitachi, Tokyo, Japan) and sputter-coated with Au/Pd with an ion sputter (E-1010, Hitachi, Tokyo, Japan). These samples were observed with a scanning electron microscope (S-3200, Hitachi, Tokyo, Japan).
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5

Ultrastructural Analysis of Fertilized Eggs

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For transmission electron microscope (TEM) observation, fertilized eggs were fixed in 2.5% glutaraldehyde in 0.1 M phosphate buffer (pH 7.4) for 2 h at 4 °C. After prefixation, the specimens were washed twice in the same buffer solution for 20 min. and then postfixed in 1% osmium tetroxide solution in 0.1 M phosphate buffer solution (pH 7.4) for 2 h at room temperature. Specimens were dehydrated in ethanol, cleared in propylene oxide, and embedded in an Epon mixture. Ultrathin sections of embedded fertilized egg envelope were taken with an ultramicrotome (Ultracut E, Reichert-Jung, Austria) at a thickness of about 60 nm. The ultrathin sections were mounted onto copper grids, double stained with uranyl acetate followed by lead citrate, and observed with a transmission electron microscope (JEM-1400, JEOL, Japan).
For scanning electron microscope observation, prefixation, postfixation and dehydration were conducted by following the same procedure as that for TEM. The samples were replaced with tert-butyl alcohol and freeze dried (ES-2030, Hitachi, Japan). The samples were coated with Pt by ion sputter (E-1045, Hitachi, Japan). Subsequently, the fertilized eggs were observed under the scanning electron microscope (S-4700, Hitachi, Japan).
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Scanning Electron Microscopy of T. rubrum Hyphae

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Immobilized hyphae of T. rubrum FH01 were subjected to SEM observation. The hyphas obtained by cultivating SDA containing 0.1% peptone broth and the immobilized hyphae using polyvinyl alcohol (PVA) gel beads were fixed with 2% glutaraldehyde for 60 min, washed with 0.1 M phosphate buffer (pH 7.2) five times, and dehydrated with an ethanol gradient from 20% to 99%, followed by 100% t-butanol. The specimens were freeze-dried and coated with platinum using a Hitachi ES-2030 and Hitachi E-1030, respectively. SEM observation was performed using a Hitachi SEM S-4500.
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7

Pectin Degradation Analysis of Protoplasts

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The incubated protoplasts were washed three times with wash buffer (0.05% MES and 0.45 M mannitol; pH 5.7) and fixed in 2.5% glutaraldehyde in wash buffer at 4° C for 30 min. After washing three times with wash buffer, post-fixation was carried out with 1% osmium tetroxide in wash buffer at 4° C for 30 min. To monitor pectin degradation, the fixed protoplast specimens were washed three times with distilled water and incubated in pectate lyase buffer (10 μg/mL pectate lyase [E-PLYCJ, Megazyme], 50 mM CAPS (3-(cyclohexylamino)-1-propanesulfonic acid) buffer, 2 mM CaCl2, 2 mM NaN3; pH 10) at room temperature for 40 h. Dehydration was carried out using a graded ethanol series (50%, 70%, 80%, 90%, and 100% three times) for 10 min each. The specimens were transferred to t-butyl alcohol three times for 5 min each and freeze-dried using a freeze dryer (ES-2030, Hitachi, Tokyo). The freeze-dried samples were sputter coated twice with platinum palladium using a Magnetron sputter (MSP-1S, VACUUM DEVICE, Ibaraki) and then secondary electron images were acquired using a field-emission scanning electron microscope (FE-SEM; SU8000, Hitachi, Tokyo) (working distance = ~13 mm, accelerating voltage = 30 kV).
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8

SEM Imaging of Nematode-Infected Plant Tissues

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Specimens inoculated with nematodes were immersed in 2.5% glutaraldehyde in 0.05 M cacodylate buffer, pH 7.2, for 12 to 24 hr at 4°C. Postfixation with 1% osmium tetroxide was performed in the same buffer for 12 hr at 4°C. Specimens were dehydrated in a graded series of ethanol: 50, 70, 80, 90, and 100%. Thereafter, ethanol was exchanged with 100% t-butyl alcohol (2-methyl 2-propanol), and specimens were freeze-dried (ES-2030; Hitachi, Tokyo, Japan). The specimens were coated with approximately 8 nm of platinum by ion spatter (E-1010; Hitachi) and observed by field emission SEM (S-4700; Hitachi) at 25 kV. To observe the inner tissues of rhizomes that had been invaded by nematodes, specimens were vertically cut into two pieces with a razor blade. The pieces were coated with platinum and observed by SEM as described above.
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9

Yogurt Microstructure Characterization

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Small strips of 2 × 5 mm were cut from the center of yogurt stored for 21 d and fixed in 2.5% glutaraldehyde solution (pH 6.8) for 6 h. After fixation, the samples were rinsed three times with phosphate buffer (pH 6.8) and then dehydrated with 50%, 70% and 90% ethanol, respectively, and twice with 100% ethanol for 10 min each. The samples were frozen at −20 °C for 30 min and dried in a freeze dryer (ES-2030, Hitachi, Japan), and the dried samples were fixed on a sample table with tape and coated with an ion sputter coater. The samples were observed and photographed using a scanning electron microscope (SEM) S-3400 (S-3400, Hitachi, Japan).
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10

Nicotine Exposure in Larval Zebrafish

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The 5-dpf wild-type larvae exposed to 5 μM and 40 μM nicotine and normal controls were prefixed by immersion in 2% glutaraldehyde in 0.1 M phosphate buffer and postfixed for 2 hours in 1% osmic acid dissolved in phosphate-buffered saline. Larvae were managed in a graded series of ethanol and t-butyl alcohol, dehydrated in a freeze dryer (ES-2030; Hitachi, Tokyo, Japan), platinum coated using an ion coater (IB-5; Eiko, Tokyo, Japan) and investigated using scanning electron microscopy (SEM; S-4700; 2,500, 3,000, 5,000× magnification, Hitachi) as previously described [20 (link)].
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