The largest database of trusted experimental protocols

10 protocols using winmdi software

1

Apoptosis Analysis of Regulatory T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Apoptosis of Treg cells was analyzed by seeding Treg cells at a density of 5 × 105cells/well, and starving them overnight in serum free DMEM. The cells were then treated with ZA (0 or 100 μM) for 24 h in DMEM supplemented with 2% FBS. Cells were harvested and incubated with FITC-labeled Annexin V and Propidium Iodide Staining Solution (eBioscience, San Diego, CA, USA). The percentages of apoptotic and necrotic cells were determined by flow cytometry (FACScalibur; BD Biosciences, San Jose, CA, USA). Five parallel samples were measured and 10,000 events were analyzed using Cell Quest Pro software (BD Biosciences, San Jose, CA, USA) or WinMDI software (San Diego, CA, USA). In addition, Treg cells were centrifuged onto microscope slides using a Cytospin2 centrifuge (Shandon Inc., Pittsburgh, PA, USA); the slides were stained with Wright-Giemsa solution and observed by light microscopy (Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
2

Apoptosis Detection via Annexin V-PE Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were suspended in apoptosis stain buffer and then stained with Annexin V-Phycoerythrin and Hoechst (PE) using an apoptosis detection kit (BD Biosciences, Franklin Lakes, NJ, USA) according to the manufacturer’s protocol. The cells were then washed with phosphate-buffered saline (PBS) and Annexin-PE-positive cells were identified via fluorescence microscopy and flow cytometry on a BD FACSCalibur instrument (BD Biosciences). The images were analyzed using WinMDI software (version 2.9; BD Biosciences).
+ Open protocol
+ Expand
3

Stem Cell Phenotype Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
1 × 105 cells/ml were fixed and incubated for 15 min at 4 °C with a 1:9 dilution of normal goat serum in PBS. The cells were then labeled with the following antibodies: FITC-conjugated anti-CD44, FITC-conjugated anti-CD34 (Chemicon; Temecula, CA, USA), FITC-conjugated anti-CD45 (Ediscience; USA), PE-conjugated-anti-CD73 (BD; San Jose, CA, USA), PE-conjugated anti-CD90 (Dako, Glostrup, Denmark) and PE-conjugated anti-CD105 (R&D; Minneapolis, MN, USA) for 1 h. The cells were washed and analyzed using a FACS Calibur (BD, NJ) machine and WinMDI software (BD Biosciences).
+ Open protocol
+ Expand
4

Apoptosis Analysis of HCT116 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the cell apoptosis analysis, HCT116 cells were harvested 48 h after transfection and immobilized in 70% ethanol at −20°C for 30 min. Then, the cells were resuspended in 10 ml RNase, and stained with propidium iodide (PI; 1:200) and Annexin V-FITC (1:200; BD Pharmingen, San Diego, CA, USA) for 30 min at 37°C. A total of 500 µl PBS was added and mixed thoroughly. The samples were then analyzed by analyzed with a FACScan flow cytometer (BD Biosciences). Apoptotic rate of cells was analyzed by flow cytometry (BD, Biosciences) using WinMDI software (version 2.9; BD Biosciences). All experiments were repeated 3 times.
+ Open protocol
+ Expand
5

Immunophenotypic Characterization of HWJ-MSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols

The surface marker expression of isolated HWJ-MSCs was investigated using flow-cytometry according to the described procedure.20 (link) In brief, 1×105 cells/mL (passage three) were washed with PBS, fixed and permeabilized with 0.2% Triton X-100 and incubated with normal goat serum diluted in PBS (1:9) for 15 min at 4°C for blocking non-specific binding of the primary antibodies. The cells were incubated with the specific antibody conjugated with fluorescein isothiocyanate (FITC) or phycoerythrin (Santa Cruz) at concentrations recommended by the respective manufacturer’s for 1 h and then analyzed by a flow cytometer. The antibodies conjugated by FITC were: anti-CD44, anti-CD34 (Chemicon, USA) and anti-CD45 (eBioscience, USA), and those conjugated by PE were anti-CD73 (Becton Dickinson [BD], USA), anti- CD90 (Dako, Denmark) and anti-CD105 (R&D, USA). Following incubation, the cells were washed with 2% FBS in PBS and run through a BD FACSCalibur (USA) flow cytometer. The control group was stained with isotype-matched antibodies (FITC- and PE-conjugated mouse IgG monoclonal isotype standards), which were confirmed by positive fluorescence of the limbal samples. Typically for each tube, 10 000 events were collected and the data analysis was performed using WinMDI software (BD Biosciences, USA).
+ Open protocol
+ Expand
6

Immunophenotyping of Human Umbilical Cord Mesenchymal Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Viable hUCMs (1×105 cells) were fixed with 4% paraformaldehyde for 15 minutes, washed by washing buffer, incubated with 200 μl of 10% goat serum for 15 minutes, and washed again by washing buffer, after which mouse anti-human antibodies conjugated with phycoerythrin (PE) against CD34, CD45, CD73, and CD90 were added. The mixture was incubated for one hour at 4˚C (19 (link)). The samples were washed by washing buffer and assessed by flow cytometry (BD FACS Calibur, USA). For each antibody, at least 10000 events were recorded per sample and data were analyzed by WinMDI software (BD Biosciences, CA).
+ Open protocol
+ Expand
7

Apoptosis Quantification in Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
NC, NR, HC and HR cells treated with BZNQ were harvested by trypsin and then suspended in PBS. Apoptosis was measured by staining with Annexin V-FITC/PI for 15 min at room temperature. The number and proportion of positively-labeled cells were analyzed by flow cytometry (FACSCalibur; BD Biosciences). The results were analyzed using the WinMDI software (version 2.9; BD Biosciences).
+ Open protocol
+ Expand
8

Characterization of Stem Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured cells were detached in non-enzymatic cell dissociation medium (Sigma-Aldrich) to preserve cell membrane markers. Cells were incubated for 30 minutes at 4 °C with monoclonal antibodies against CD34-PE, VEGFR2-FITC, and CD133-PE (eBioscience) according to manufacturer’s protocol. Quantitative fluorescence analysis was performed using a fluorescence-activated cell sorting (FACS) flow cytometer and WinMDI software (Becton Dickinson).
+ Open protocol
+ Expand
9

Cell Cycle Analysis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
The control and treated splenocytes were collected, washed with ice-cold PBS and fixed with 75% ethanol at 4°C for 16 hr. After fixation, cells were washed twice with ice-cold PBS and incubated in 1 mL of a solution containing 0.1% Triton X-100, RNase A (39.5 µg/mL) and PI (20 µg/mL) for 30 min. The fluorescence emitted from the PI-DNA complex was measured at 488 nm excitation/600 nm emission using a FACScan instrument (Becton Dickinson, San Jose, CA, USA), and the percentage of cells below the G1 peak (subG0/G1 fraction) was analyzed using the WinMDI software (Becton Dickson, San Jose, CA, USA).
+ Open protocol
+ Expand
10

Rabbit Carotid Artery Stent Implantation

Check if the same lab product or an alternative is used in the 5 most similar protocols
All care and handling of the animals were provided according to the Guide for the care and use of Laboratory Animals approved by the Ethical Committee of Researches of Nanjing University.
In brief, 30 male rabbits (New Zealand white) with a body weight between 3.5 and 4.0 kg were randomly implanted with BMS (n = 15) and VE-cad-Z stents (n = 15) in the left carotid arteries and were followed for 3 and 30 days. Anesthesia was induced with an injection of intramuscular ketamine (30 mg/kg) and intravenous pentobarbital (30 mg/kg) and then maintained using isoflurane and oxygen. Through a longitudinal left neck incision, left common carotid artery exposed. Before arterial clamping, heparin (100 U/kg) was administered intravenously. Then, a BMS or VE-cad-Z stent was implanted in the left common coated 35-mm diameter tissue culture plates (BD Biosciences). Medium was changed daily for 7 days and then every other day till the first passage. To further confirm the OECs phenotype, the cultured cells were incubated with monoclonal antibodies against CD31-PE, CD144-PE, CD34-PE (BD Bioscience), CD14-FITC, CD45-FITC (Immunotech), and CD133-PE (R&D Systems) and analyzed using a fluorescenceactivated cell sorting (FACS) flow cytometer and Win-MDI software (Becton Dickinson).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!