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6 protocols using octyl r 2hg

1

Small Molecule Inhibitor Assay

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Octyl-(R)-2HG, PI-103 and rapamycin were purchased from Sigma, Cayman (Ann Arbor, MI) and LC Laboratories (Woburn, MA), respectively.
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2

Hematopoietic Induction with (R)-2HG and MS275

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DMSO (solvent control), 0.1 mM Octyl-(R)-2HG (Sigma-Aldrich) or 2 μM MS275 (Santa Cruz) was added for 16 hours to the hematopoietic induction cultures before harvesting the floating cells.
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3

Cell Proliferation Assay Optimization

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Approximately 1.5 × 104 cells were plated in triplicate in 12-well plates and cultured for the appropriate time until they were ready for counting. The cells were then collected for cell counting using a NovoCyte flow cytometer (NovoCyte 2040 R, Agilent Technologies, Inc., CA, USA). In addition to genetic interference, dimethyl α-KG, L-glutamine, or octyl-(R)-2HG (Sigma-Aldrich) was added to evaluate their contribution to cell proliferation.
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4

Metabolic Profiling of Cell Treatments

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We used the following specific chemical compounds for cell treatment: (aminooxy)acetic acid hemihydrochloride (Sigma-Aldrich C13408), CB-839 (Focus Biomolecules 10-4556), BPTES (Sigma-Aldrich, SML0601), dmOG (Sigma-Aldrich, 349631), methyl pyruvate (Sigma-Aldrich, 371173), 17-β-estradiol (Sigma-Aldrich, E2758), octyl-R-2HG (Sigma-Aldrich, SML2200). Antibodies used in the study were following: Gls1 (Abcam ab156876), PHGDH (Abcam ab57030), anti-FLAG (M2, Sigma-Aldrich F1804), IDH2 (Abnova H00003418-M01), ATP5A (Abcam ab14748), Tim23 (Abcam ab176558), PDH (Abcam ab92696), and β-actin (Abcam ab8226).
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5

Mitochondrial Metabolism Analysis Protocol

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L-glutamine, dimethyl alpha-ketoglutaric acid, U-13C-glutamine, octyl-(R)-2HG, rotenone, oligomycin, and 2-[2-[4-(trifluoromethoxy)phenyl] hydrazinylidene]-propanedinitrile were purchased from Sigma-Aldrich (MO, USA). Fluorocitrate was prepared from DL-fluorocitric acid barium salt (Sigma-Aldrich) as previously described41 (link). Antimycin A was purchased from Abcam (MA, USA). Devimistat (CPI-613) was purchased from Selleck (TX, USA). MG132 was purchased from MCE (NY, USA). Antibodies recognizing β-actin (sc-47778; 1:5000), GAPDH (sc-32233; 1:1000), and NDUFS3 (sc-374282; 1:1000) were purchased from Santa Cruz Biotechnology (TX, USA). Antibodies recognizing IscU (#14812; 1:1000), NDUFSC1 (#12444-1-AP; 1:1000), and TOM40 (#18409-1-AP; 1:1000) were purchased from Proteintech (IL, USA). Antibodies recognizing UQCRFS1 (ab191078; 1:1000), aconitase 2 (ab110321; 1:1000), SDHB (ab14714; 1:1000), and α-KGDH (ab58724; 1:1000) were purchased from Abcam (Cambridge, United Kingdom). The secondary anti-mouse (#7076; 1:2000) or anti-rabbit (#7074; 1:2000) IgG antibodies and an anti-Myc antibody (#2276; 1:1000) were purchased from Cell Signaling Technology (MA, USA).
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6

Chemical Compounds for Cell Culture

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The following chemical compounds were used in culture: AGI-5198 (Selleckchem), FK866 (Cayman Chemical), Dimethyl Sulfoxide (Sigma-Aldrich), Doxycycline hyclate (Sigma-Aldrich), Nicotinamide (Sigma-Aldrich), Nicotinamide mononucleotide (Sigma-Aldrich), Octyl-(R)-2HG (Sigma-Aldrich), Olaparib (Selleckchem), PDD00017273 (Tocris), and Temozolomide (Cayman Chemical).
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