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6 protocols using fitc mouse igg1 κ isotype control

1

Comprehensive Immunophenotyping of Epithelial Cells

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1 × 105 epithelial target cells were washed and re-suspended in the cell staining buffer (Biolegend) containing different dye-conjugated primary antibodies at 1 μg/ml or 5 μg/ml for 30 min at 4°C. Cells were then washed and stained with the Zombie NIR (cell death marker, Biolegend). The stained cells were analyzed by flow cytometry with a FACSCanto II cytometer (BD Biosciences). Primary antibodies targeting the various surface ligands and receptors as well as the corresponding control include: FITC anti-human HLA-A,B,C (Clone W6/32, Biolegend), PE anti-human HLA-E (Clone 3D12, Biolegend), FITC anti-human ICAM-1/CD54 (Clone DX2, Biolegend), FITC anti-human Fas/CD95 (Clone DX2, Biolegend), APC anti-human Nectin-2/CD112 (Clone TX31, Biolegend), APC anti-human PVR/CD155 (Clone SKII.4, Biolegend), PE anti-human MICA (Clone 159227, R&D Systems), PE anti-human MICB (Clone 236511, R&D Systems), PE anti-human ULBP-2/5/6 (Clone 165903, R&D Systems), FITC Mouse IgG1 κ Isotype Control (Clone MOPC-21, Biolegend), APC Mouse IgG1 κ Isotype Control (Clone MOPC-21, Biolegend), and PE Mouse IgG2b κ Isotype Control (Clone MPC-11, Biolegend). Cell death analysis by Annexin V staining was performed using the FITC Annexin V detection kit (Biolegned) following the manufacturer’s protocol.
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2

Isolation and Characterization of PBMCs

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Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll-Hypaque density gradient centrifugation. For surface staining, PBMCs were stained for 30 min in the dark at 4°C with the monoclonal antibodies PE-CF594 mouse anti-human CD4 (BD Biosciences, San Diego, CA, USA), PE anti-human CD25 (BioLegend, San Diego, CA, USA), FITC anti-human CD161 (BioLegend), 7AAD (BD Pharmingen, San Diego, CA, USA), and CD45RO PE-Cy7 (BD Biosciences) or with FITC Mouse IgG1 κ isotype control (BioLegend) and Mouse IgG1 κ isotype control PE (eBioscience, San Diego, CA, USA). For intracellular staining of cytokines, incubate PBMCs in RPMI 1640 medium (Gibco, Life Technologies, Shanghai, China) in 5% CO2 at 37°C, then stimulate these cells for 5 h, PBMCs were stimulated for 5 h with 50 ng/mL phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich, Steinheim, Germany) and 1 μg/mL ionomycin (BD Pharmingen) in the presence of 10 μg/mL Brefeldin-A (BFA; BioLegend) and subsequently fixed and permeabilized by Foxp3/Transcription Factor Staining Buffer Set (eBioscience). Then the cells were stained for 30 min away from the light at 4°C with anti-human IL-17A APC (eBioscience) or Mouse IgG1 κ Isotype Control APC (eBioscience).
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3

Mesenchymal Stem Cell Characterization

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TGF-β1 (PEPRO TECH, China, 100-21-10 μg), PC-MSC (Provided by Shenzhen 150 Biomedical Co.,Ltd.), ESC (Provided by ATCC), FITC Mouse IgG1 κ Isotype control (Biolegend, 7313762), PE Mouse IgG1 κ Isotype control (Biolegend, 9217868), APC Mouse IgG1 κ Isotype control (Biolegend, 9282592), PE Mouse Anti-Human CD73 (Biolegend, 8151901), APC Mouse Anti-Human CD105 (Biolegend, 9277133), FITC Mouse IgG2a κ Isotype control (Biolegend, 8241935), FITC Mouse Anti-Human CD14 (Biolegend, 8299630), FITC Mouse Anti-Human CD45 (Biolegend, 8206704), DMEM/F12 medium (Peiyuan, Shanghai, L310 kJ), Fetal bovine serum (Gemini, 900-108), Trypsin digestive fluid (Beyo, C0203), DPBS (Beyo, C0221G), CCK8 (Beyotime, C0039), EDU staining kit (Beyotime, C0081s), Hematoxylin-eosin staining kit (Solarbio, G1120), DEPC-treated water (Solarbio, R1600), trichloromethane (Sinopharm Chemical Reagent Co. LTD., 10006818), GelRed dye (Biotium, #41003), RNA Loading Buffer (TaKaRa, 9168), Tris-Borate-EDTA Buffer (TBE) 10× Powder, pH8.3 (TaKaRa, T9122), RNAsimple Total RNA Kit (TIANGEN, DP419), All-in-One First-Strand Synthesis Master Mix (Yugong Biolabs, EG15133S), SuperReal PreMix Plus (SYBR Green) (TIANGEN, FP205-02), and Methacrylate anhydride (MAA, 0.1 mL/1 g gelatin), ELISA Kit (Solarbio, SEKH-0052), MateRegen® Gel (2104006, BioRegen Biomedical (Changzhou) Co., Ltd.).
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4

Extracellular Vesicle Surface Profiling

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TdTomato P-EVs and Br-EVs (1010 particles in 100 µL PBS) were incubated with 5 µg/mL of fluorescent-conjugated antibodies: FITC anti-human CD73 antibody (Cat # 344015, BioLegend, San Diego, CA, USA), FITC anti-human uPAR antibody (Sino Biological, Cat # 10925-MM09-F), Alexa Flour® 488 anti-human ICAM1/CD54 antibody (BioLegend, Cat # 322713), Alexa Flour® 488 anti-human CD29 antibody (BioLegend, Cat # 303015), FITC anti-human CD49b antibody (BioLegend, Cat # 359305), Alexa Flour® 488 anti-human CD63 antibody (BioLegend, Cat # 353037), Alexa Flour® 488 mouse IgG1, κ isotype control (BioLegend, Cat # 400132), and FITC mouse IgG1, κ isotype control (BioLegend, Cat # 400107). Following a 2 h incubation at room temperature, EVs were washed through ultracentrifugation to remove any free antibodies. Pellets were resuspended in PBS and fluorescence intensity was measured using a SpectraMax M2 plate reader. The fluorescence intensity of FITC or Alexa Flour® 488 was normalized to that of TdTomato for both antibodies and isotype controls. The normalized measurements of antibodies were then subtracted from those of isotype controls.
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5

Characterization of Immune Cell Phenotypes

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FITC mouse IgG1 κ isotype control (400110), PerCP-Cy5.5 mouse IgG1 κ isotype control (400149), PE mouse IgG1 κ isotype control (400114), PerCP-Cy5.5 anti-human CD3 (300430), FITC anti-human CD8a (300906), PE anti-human CD45 (368510), PerCP-Cy5.5 anti-human IFN-γ (506528), FITC Rat IgG2a κ isotype control (400506), PerCP-Cy5.5 Rat IgG1 κ isotype control (400426), FITC anti-mouse CD3 (100204), FITC anti-mouse CD8a (100705), PE anti-mouse CD45 (103106), and PerCP-Cy5.5 anti-mouse IFN-γ (505822) were purchased from Biolegend. PE anti-human PD-L1 (557924), FITC anti-human PD-L1 (558065), FITC anti-human HLA-A2 (343303), FITC Rat IgG2b κ isotype control (400605), PE Rat IgG2a λ isotype control (400635), and PE anti-mouse PD-L1 (558091) were obtained from BD Biosciences.
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6

Immunophenotyping and Signaling Pathway Analysis

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FITC-conjugated CD274 mouse monoclonal antibody (#558065), FITC-conjugated CD47 (#556045) and FITC mouse IgG were from BD Biosciences. FITC anti-human MHC Ⅰ (#343303), FITC anti-human CD8a (#300906) and FITC mouse IgG1 κ isotype control (#400110) were from Biolegend. Anti-PD-L1 (#13684), anti-Phospho-STAT1 (Tyr701) (#7649), anti-Phospho-STAT1 (Ser727) (#8826) and anti-CAMKII (#3362) antibodies were from Cell Signaling Technology. Anti- STAT1 p84/p91 (sc-346), anti-AKT1/2/3 (sc-8312), anti-P-AKT1/2/3 (Thr308) (sc-16646), anti-ERK (sc-94) and anti-P-ERK (sc-101761) antibodies were from Santa Cruz Biotechnology. Anti-GAPDH (db106) was from diagbio. Lercanidipine (PubChem CID: 65866; purity > 99%), Amlodipine (PubChem CID: 60496; purity > 99%), Azelnidipine (PubChem CID: 65948; purity > 99%), Verapamil (PubChem CID: 2520; purity > 99%), Diltiazem (PubChem CID: 39186; purity > 99%), BAPTA-AM (PubChem CID: 2293; purity > 99%), AMG-517 (PubChem CID: 16007367; purity > 98%), KN-93 (PubChem CID: 5312122; purity > 99%), MG132(PubChem CID: 462382; purity > 97%) and Chloroquine (PubChem CID: 6301; purity > 99%) were from TargetMol. Sulforhodamine B (#230162) was from Sigma-Aldrich. Fluo-4 AM (S1060) was from Beyotime.
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