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9 protocols using apc anti mouse cd8a antibody

1

Tetramer-based Immune Cell Profiling

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A total of 60 µL blood was collected and stained with 10 µL E7-specific or p15E-specific tetramer (both provided by NIH tetramer core facility) to a final 500 times dilution for 1 hour on ice with constant shaking. Aqua fluorescent reactive dye for live and dead staining (Invitrogen, catalog no. L34957) in a final 500 times dilution, FITC anti-mouse CD4 Antibody (BioLegend, catalog no. 100406) and APC anti-mouse CD8a Antibody (BioLegend, catalog no. 100712) in a final 200 times dilution was added to the testing samples to a total volume of 100 µL and incubated for 30 minutes on ice with constant shaking. After one wash with cold PBS and centrifugation at 1,350 rpm for 3 minutes, the cells were resuspended in 200 µL FACS buffer and ready for examination by using BD LSRFortessa X-20 cytometer. Data were processed by Flowjo (version 10).
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2

Quantifying T-cell Cytokine Responses to Influenza Antigens

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Mouse spleens were harvested on the 56th day after the first vaccination, and single-cell suspensions were prepared by processing them through a 70 μm cell strainer ( BD Biosciences, San Jose, CA, USA). Red blood cells presenting in the splenocyte suspensions were lysed using Red Blood Cell Lysis Buffer (Beyotime, Shanghai, China). The cells were inoculated into 96-well plates, and 20 μM antigenic peptides (M2e+HA2) were added to each well. After 1 h of incubation, we added the Brefeldin A Solution (1X) to each well and incubated them for another 5 h. Then, we washed the cells once with PBS buffer, added FITC anti-mouse CD3ϵ, PE/Cy7 anti-mouse CD4, and the APC anti-mouse CD8a antibody simultaneously (BioLegend, San Diego, CA, United States). Next, we incubated them at 4°C for 45 min and washed them with PBS twice, after which, we added the Cytofix/Cytoperm™ Solution and incubated them at 4°C away from light for another 20 min. Then, we washed the cells twice by using the BD Perm/Wash™ Buffer (BD, San Jose, CA, United States) and divided each tube of cells equally into 3 tubes; next, we added the PE anti-mouse IL-2, IL-4, or IFN-γ antibody, respectively, and incubated them for 1 h at 4°C away from light. After being washed twice, the stained cells were put into flow cytometry (Beckman Coulter, Miami, FL, United States) for detection.
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3

Comprehensive Immune Cell Profiling

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AT-infiltrating stromal cells were stained with FITC anti-mouse CD3ε antibody, PE anti-mouse CD4 antibody, PE/Cy7 anti-mouse CD25 antibody, APC anti-mouse CD8a antibody, FITC anti-mouse CD127 antibody, PerCP/Cy5.5 anti-mouse CD4 antibody, APC anti-mouse CD25 antibody (these antibodies were purchased from Biolegend, San Diego, CA, USA), PE anti-mouse/Foxp3 antibody (Invitrogen, Carlsbad, CA, USA), PE anti-mouse CD11b antibody (Biolegend), PE/Cy7 anti-mouse Ly-6C antibody (Biolegend, San Diego, CA, USA) and APC anti-toll-like receptor 4 (TLR4) antibody (Invitrogen, Waltham, MA, USA), and analyzed using an Accuri C6 (Becton, Dickinson and Company, Franklin Lakes, NJ, USA).
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4

Flow Cytometric Profiling of Renal Immune Cells

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Flow cytometry was performed as previously described (Zhao et al., 2018 (link)). Briefly, kidneys were weighed and minced. A collagenase solution (1 mg/ml; Sigma-Aldrich, St. Louis, MO, United States) was used for renal digestion for 30 min at 37°C. A 100-μm cell strainer (Fisher Scientific) was used, together with a 1-ml syringe plunger, to acquire single cells. Cell pellets were washed and resuspended for further experiments. Anti-Mouse CD16/CD32 (553141; RRID:AB_394656, clone 2.4G2; BD Biosciences, San Jose, CA, United States) was used for non-specific Fc block. Antibodies used in this assay were acquired from BioLegend, San Diego, CA, United States; they include BV421 anti-mouse CD45 (RRID:AB_2562559), APC anti-mouse F4/80 antibody (RRID:AB_893481), PE anti-mouse CD206 (MMR) antibody (RRID:AB_10895754), FITC anti-mouse CD86 antibody (RRID:AB_313149), PerCP/Cyanine5.5 anti-mouse/human CD11b (RRID:AB_893232), APC/Cyanine7 anti-mouse CD3 antibody (RRID:AB_2242784), FITC anti-mouse CD4 antibody (RRID:AB_312713), and APC anti-mouse CD8a antibody (RRID:AB_312750). Data were acquired on a FACS Calibur cytometer [Becton Dickinson (BD), Bedford, MA, United States] and analyzed using FlowJo software (Tree Star, Ashland, OR, United States).
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5

Isolation and Characterization of OVA-Specific CD8+ T Cells

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After 7 days of infection, 3 CARLIN mice were euthanized, and their spleens were harvested. The spleens were mashed in flow staining buffer (1xPBS, 2%FBS, 1mM EDTA) using the back of a 5ml syringe plunger and then passed through a 70-micron filter to get a single cell suspension. The splenocytes were treated with 1x red blood cell lysis buffer (BioLegend, Cat#420302) for 5 minutes (mins) at room temperature (RT) to deplete erythrocytes. Next, CD8 T cells were enriched in flow buffer using the EasySep Mouse CD8+ T-cell Isolation Kit as per manufacturer’s instructions (STEMCELL, Cat#19853). Enriched CD8 T cells were then incubated with Zombie NIR dye (BioLegend, Cat#423106) in 1xPBS for 10 mins at RT in darkness followed by a wash with excess 1xPBS. The enriched CD8+ T cells were then incubated with APC anti-mouse CD8a antibody (BioLegend, Cat#100712, RRID:AB_312751), OVA-Tetramer-BV421 and OVA-Tetramer-PE for 30 mins on ice in darkness. Stained cells were resuspended at about 5 million cells/ml concentration in flow buffer for the cell sort. Finally, live, OVA-Tetramer-BV421 and OVA-Tetramer-PE double positive CD8+ T cells were sorted in 1xPBS + 0.05% BSA on a SONY SH800S cell sorter.
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6

Splenocyte Cytokine Response Assay

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Splenocytes were harvested and suspended in RPMI 1640 medium containing 10% FBS to 2 ​× ​107 ​cells/mL. And 100 ​μL of each sample was added into 96U well plate. These splenocytes were then stimulated with PBS, sE2-E1 protein, E2EP3 peptide, E1328-345 peptide or PMA/Inomycin, respectively. After 1 ​h incubation at 37 ​°C, Golgi plug were added into samples to prevent IFN-γ secretion. Five ​hours later, cells were transferred in FCS tube, and then incubated with AF488 anti-mouse CD3 antibody, APC anti-mouse CD8a antibody and BV785 anti-mouse CD4 antibody (Biolegend) at 4 ​°C for 30 ​min. After permeabilization and fixation, cells were washed with PBS twice. Then cells were incubated with PE anti-mouse IFN-γ antibody in fixation solution for 30 ​min and washed with PBS twice. After resuspending with 300 ​μL PBS, cells were analyzed using BD LSRFortessa flow cytometry.
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7

Spleen Lymphocyte Isolation and Characterization

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The spleens of mice were taken out and placed in a 6-well plate containing 1 ml of pre-cooled phosphate-buffered saline (PBS), 24 h after the last administration. After homogenizing, the cells were filtered through a 200-mesh sieve, lysed with 600 μl of 1 × red blood cell lysate on ice for 15 min in the dark. After centrifugation at 350 g for 5 min, the cells were resuspended with PBS. This step was performed twice. Next, each spleen lymphocyte suspension (100 μl) was stained with FITC anti-mouse CD4 antibody (100405, Biolegend, San Diego, United States), APC anti-mouse CD8a antibody (100711, Biolegend, San Diego, United States), or PE anti-mouse CD3 antibody (100205, Biolegend, San Diego, United States) for 25 min in the dark. After washing twice with pre-cooled PBS containing BSA, the spleen lymphocytes were analyzed using a BD FACSVerse flow cytometer (Becton Dickinson, San Jose, CA, United States). Data were processed using FlowJo X 10.0.7r2 (BD, Ashland, United States).
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8

Isolation and Characterization of Splenocytes

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The splenocytes were isolated from immunized mice at the end of the experiment according to the previously described protocol (Liu et al., 2013 (link); Xu et al., 2021 (link)). Briefly, the mouse spleen was homogenized and suspended in Roswell Park Memorial Institute (RPMI) 1640 (Hyclone, Beijing, China) to prepare cell suspension. Then, the splenic lymphocytes were isolated by centrifugation using a mouse lymphocyte isolation solution according to the manufacturer’s instructions (Hao Yang Biological Manufacture Co., Ltd., Tian Jin, China). Afterward, lymphocytes were resuspended in RPMI 1640 supplemented with 10% fetal bovine serum and counted.
The splenocytes (106 cells) were incubated with 1 mL PE/Cyanine7 anti-mouse CD3ϵ Antibody, FITC anti-mouse CD4 Antibody, or APC anti-mouse CD8a Antibody (Biolegend, USA) at 4 °C for 30 min, centrifuged at 1500 rpm for 5 min. Next, the pellet was resuspended in PBS and centrifuged at 1500 rpm for 5 min, followed by examination using Flow cytometry (CytoFLEX, Beckman, USA).
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9

Isolation and Analysis of Hippocampal Immune Cells

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Animals were transcardially perfused with precooled PBS. Then, the whole brain was removed and placed in precooled complete DMEM to further isolate the hippocampus under a stereomicroscope. The hippocampi were scissor-minced and manually homogenized. The tissue was subsequently dissociated by adding accutase (Sigma-Aldrich) and incubated at 37 °C, 5% CO2 in a cell culture incubator for 15 min. The reaction was stopped by adding serum-containing culture medium. Single-cell suspensions were filtered with a 70-µm nylon mesh. Density gradient centrifugation using Percoll (Biosharp) was performed to isolate the mononucleated immune cells. Samples were washed with PBS three times. Fc receptors were blocked by TruStain FcX™ PLUS (anti-mouse CD16/32, Biolegend) for 5 min on ice. PE anti-mouse CD3ε antibody (Biolegend), FITC anti-mouse CD4 antibody (Biolegend) and APC anti-mouse CD8a antibody (Biolegend) were added for 20 min at 4 °C and protected from light. Isotype-matched antibodies were used as controls. After cleaning the cells with PBS three times, samples were run on a BD LSRFortessa cell analyzer.
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