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27 protocols using 3 trimethylsilyl propionic 2 2 3 3 d4 acid sodium salt tsp

1

Preparation of Phosphate Buffer in D2O

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Deuterium oxide 99.9%, sodium dihydrogenphosphate hydrate (NaH2PO4·H2O), disodiumhydrogen phosphate dihydrate (Na2HPO4·H2O2), and 3-(trimethylsilyl)propionic-2,2,3,3-d4 acid sodium salt (TSP) were purchased from Sigma-Aldrich (Milan, Italy). Deuterated EDTA d-16 98% was obtained from Product Cambridge Isotope Laboratories, Inc.
Phosphate buffer solution was prepared as follows: 49.7 mg of sodium dihydrogenphosphate hydrate (0.36 mmol), 202.9 mg of disodium hydrogen phosphate dihydrate (1.14 mmol), and 0.92 mg deuterated EDTA d-16 (0.003 mmol) were dissolved in 10 mL of water. The pH was checked at 7.1. The solution was distributed into 5 mL aliquots and then lyophilized. Each aliquot was dissolved in about 1 mL of D2O and lyophilized again. Finally, the buffer was dissolved in 5 mL of deuterium oxide with 0.002% TSP (12 mM).
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2

Alginate-Based Biomaterial Synthesis

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Sodium alginates were purchased and used as received from two commercial manufactures: Sigma-Aldrich (St. Louis, MO, USA) and Panreac AppliChem (Darmstadt, Germany), hereafter referred to as SA1 and SA2 respectively. Zinc chloride (≥ 97.0%, bioreagent for molecular biology suitable for cell culture), calcium chloride (≥ 93.0%) and graphene oxide were acquired from Sigma-Aldrich and used without further purification. Guluronate and mannuronate carbohydrate standards were provided by CarboSynth (Compton, Berkshire, UK). Glucose, trifluoro acetic acid, triethylenetetraminehexaacetic acid (TTHA), deuterium oxide (D2O, D-99.9%) and 3-(Trimethylsilyl)-propionic-2,2,3,3-d4 acid sodium salt (TSP) were supplied also from Sigma-Aldrich.
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3

Spectroscopic Study of Host-Guest Complexation

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In order to study the complex formation and its stoichiometry, the Job method was performed. The experiments were carried out using a Shimadzu UV-2450 spectrophotometer. The Job method was performed by adding an aqueous host solution to an aqueous guest solution whose concentration varied from 0 to 1.0 mol fraction. The absorbance of the solutions was measured at a wavelength of λmax = 286 nm for the NaSal-Na4EtRA system and λmax = 296 nm for the NaSal-β-CD.
An NMR titration was performed at 298.15 K using a Varian of 400 MHz spectrometer with a 5 mm probe. Residual solvent (HOD) at pre-saturation was used to perform the spectra; 24 k data points covering a spectral width of 8 kHz were obtained, the radiofrequency excitation pulse was 45° and the scan repetition time was 15 s to allow for complete relaxation. The resonance of the Si-(CH3)3 signal in TSP was used as internal reference, assigning it a shift value of 0 ppm. Samples were prepared in D2O (Eurisotop, 99.9%) as solvent, and tracer amounts of 3-(trimethylsilyl)propionic-2,2,3,3-d4 acid sodium salt (TSP), from Sigma. The NMR titration was performed by adding a carrier aqueous solution (8mM) to sodium salicylate aqueous solution (2.9mM), during the entire titration process, no precipitate was observed [29 (link)]. The results were analyzed using the HypNMR software [13 (link)].
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4

NMR Spectroscopy Reagent Preparation

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Methanol-d4 (MeOD, 99.8% atom D) and sodium deuteroxide (NaOD, 99.5% atom D; 40% in D2O) were obtained from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA). Deuterium oxide (D2O, 99.9% atom D) including 0.05% 3-(trimethylsilyl) propionic-2, 2, 3, 3-d4 acid sodium salt (TSP) and potassium phosphate (KH2PO4) was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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5

NMR Spectroscopy Sample Preparation

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Deuterium oxide (D2O, 99.9% atom D) including 0.05% 3-(trimethylsilyl) propionic-2,2,3,3-d4 acid sodium salt (TSP), Deuterium oxide (D2O, 99.9% atom D), and monopotassium phosphate (KH2PO4) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium deuteroxide solution (NaOD, 99.5% atom D; 40% in D2O) was purchased from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA).
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6

Analytical Standards for Allium Compounds

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Ultra-pure water and all organic solvents of analytical grade were purchased from ROMIL-UpSTM (Waterbeach, Cambridge, UK). Deuterium oxide (D2O, 99.90% D), CD3OD (99.95% D), and 3-(trimethylsilyl) propionic-2,2,3,3-d 4 acid sodium salt (TSP) were purchased from the Sigma-Aldrich chemical company (Sigma-Aldrich, Milano, Italy). The standard compounds chosen as representatives of their main class were S-allyl-L-cysteine, S-methyl-L-cysteine, and (±)-L-alliin ≥ 90%, all of which were purchased from Merck KGaA (Darmstadt, Germany), allicin, obtained from MedChemExpress (Monmouth Junction, NJ, USA), and methiin, purchased from Abcam (Cambridge, UK).
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7

Synthesis of Sodium Silicate Hydrate

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Sodium silicate pentahydrate, Na2SiO3·5H2O, silicic acid (<20 micron, refined, 99.9%) and potassium hydroxide was purchased from Sigma Aldrich. Rubidium hydroxide hydrate was purchased from Alfa-Aesar. ETID (either as solid tetrasodium salt or as acid in aqueous solution) was used as received from Solutia Inc. Deuterium oxide (99.9 atom % D) that contained 0.05 wt. % 3-(trimethylsilyl)propionic-2,2,3,3-d4 acid, sodium salt (TSP) purchased also from Sigma-Aldrich. Deionized water from an ion-exchange resin was used for all experiments and stock solution preparations.
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8

Quantitative NMR Metabolite Profiling

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Water-soluble metabolites from liver and muscle were reconstituted in a 50 mM phosphate buffer (pD = 7.4) in 2H2O (99.8%, CortecNet, France), with 4.94 mM 3-(trimethylsilyl) propionic-2,2,3,3-d4 acid sodium salt (TSP) (Sigma-Aldrich, Spain) as an internal NMR standard. Proton-decoupled 1H NMR spectra were obtained using a Varian VNMRS 600 MHz (Agilent, Santa Clara, CA, United States) spectrometer equipped with a 3 mm 1H(X)-PFG inverse configuration probe. A CPMG pulse sequence was used for each liver sample (spectral width 7 kHz; acquisition time 3 s; saturation delay 2 s; relaxation delay 2 s; 32 scans; 512 ms echo- time; at 298 K). For the muscle samples a 1H-Presat pulse sequence was used (spectral width 7 kHz; acquisition time 4.45 s; saturation delay 3 s; relaxation delay 4 s; 32 scans; at 298 K). To assist metabolite identification, a homonuclear J-Resolved spectrum was collected on a representative sample of each group, using a standard Varian pulse sequence. All spectra were processed in the ACD/NMR Processor Academic Edition from ACD\Labs 12.0 software (Advanced Chemistry Development, Inc.) applying: zero-filling to 65 k, line broadening of 0.2 Hz, phasing and baseline correction. The chemical shifts were referenced to TSP peak at 0 ppm.
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9

Analytical Characterization of Food Compounds

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All Reagents and standard compounds were of analytical or high performance liquid chromatography (HPLC) grade (≥99%). Acetic acid, acetaldehyde, ethanol, formic acid, d-glucose, mannitol and methanol were obtained from Merck, Darmstadt, Germany; HMF was provided by Acros, Geel, Belgium; succinic acid was sourced from VWR, Darmstadt, Germany; isobutanol, isopentanol and 2-phenylethanol were acquired from Alfa Aesar (ThermoFisher, Karlsruhe, Germany); citric acid, ethyl acetate, ethyl lactate, fructose, 1-propanol, sodium benzoate, sodium propionate, sucrose, and 3-(trimethylsilyl)propionic-2,2,3,3-d4 acid sodium salt (“TSP”, 98 atom% D) and the reagents for the buffer potassium dihydrogen phosphate and potassium hydroxide and sodium azide were bought from Sigma-Aldrich, Steinheim, Germany; deuterium oxide (D2O, 99.9 atom% D) came from Deutero, Kastellaun, Germany. All aqueous solutions were made using demineralised water.
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10

Comparative Analysis of Traditional and Balsamic Vinegar Metabolites

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A total of 57 samples of both TBVM and BVM have been analyzed. The 36 samples of TBVM were of different ages from 12 to over 25 years (14 old and 22 extra-old). Among the 21 samples of BVM, 13 were defined as aged. All kinds of vinegar samples were provided by private producers. Each sample belonged to a different set of barrels. Pyridoxine, dimethyl sulphoxide-d6 (DMSO-d6), and 3-(Trimethylsilyl)propionic-2,2,3,3-d4 acid sodium salt (TSP) for internal referencing were purchased from Sigma-Aldrich (Milan, Italy). Citric, malic, succinic, lactic, acetic, formic, and tartaric acids, ethyl acetate, glucose, fructose, 6-O-acetyl glucose, acetyl fructose, 5-hydroxymethylfurfural (5-HMF), leucine, valine, 2,3-butanediol, and ethanol were provided by Sigma-Aldrich (Milan, Italy).
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