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Optima lc ms grade water

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, France

Optima LC-MS grade water is a high-purity water solution designed specifically for use in liquid chromatography-mass spectrometry (LC-MS) applications. It is produced and packaged to meet the stringent requirements of LC-MS analysis, ensuring low levels of contaminants that can interfere with sensitive MS detection.

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66 protocols using optima lc ms grade water

1

Quantification of 8-Isoprostane Levels

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8-isoprostane (8-iso prostaglandin F2α, 8-epi PGF) and 8-isoprostane-d4 were purchased from Cayman Chemicals (Ann Arbor, MI, USA). Acetic acid (AA) was purchased from Sigma-Aldrich (St. Louis, MO, USA) and formic acid was purchased from J. T. Baker (Phillipsburg, NJ, USA). Optima LC-MS grade water, acetonitrile, methanol, and other chemicals were purchased from Fisher Scientific (Fairlawn, NJ, USA).
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2

Metabolomic Profiling Using AbsoluteIDQ p400 HR

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Benzocaine (BENZOAK, ACD Pharmaceuticals AS, Leknes, Norway), Optima LC−MS grade water, acetonitrile, isopropanol and methanol were provided by Fisher Scientific (Oslo, Norway). Ammonium carbonate was from Fluka (Steinheim, Germany), whereas phenyl isothiocyanate (PITC; ≥99%), was purchased from Sigma-Aldrich (St. Louis, MO, USA). The AbsoluteIDQ® p400 HR Kit was provided by Biocrates Life Sciences AG (Innsbruck, Austria).
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3

Quantitative LC-MS Reagent Acquisition

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All AEDs and stable isotopically labeled internal standards (SIL-ISs) were purchased from Sigma-Aldrich (St. Louis, MO). Optima LC/MS grade water, isopropyl alcohol, and methanol were obtained from Fisher Scientific (Hampton, NH). Optima LC/MS grade formic acid and ammonium acetate were obtained from Fisher Scientific (Hampton, NH).
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4

Quantification of Hydroxychloroquine and 2-DG

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Hydroxychloroquine sulfate (HCQ) was purchased from TCI Chemicals (Portland, OR, USA) (catalog H1306). Deuterated hydroxychloroquine-d4 (HCQ-d4) were purchased from Toronto Research Chemicals (Toronto, ON, Canada) as the analytical internal standard (IS). 2-Deoxy-D-glucose (2-DG) was purchased from Sigma-Aldrich (St. Louis, MO, USA) (catalog number D6134). 13C6-2-deoxy-D-glucose (13C6-2-DG) and 13C1-2-DG (in initial method testing) were purchased from Toronto Research Chemicals (Toronto, ON, Canada) as IS for 2-DG. Formic acid was purchased from J. T. Baker (Phillipsburg, New Jersey, USA). Optima LC-MS grade water, acetonitrile and methanol and other chemicals were purchased from Fisher Scientific (Fair Lawn, New Jersey, USA).
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5

Dionex UltiMate 3000 Nano LC for yaGfl Quantification

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The separation was achieved using a
Dionex UltiMate 3000 Nano LC system (NCS-3200RS, Thermo Scientific,
Germering, Germany) fitted with a micro-LC flow selector to deliver
a mobile phase. Channel A contained 0.1% trifluoroacetic acid (TFA,
Sigma Aldrich) in Optima LC-MS grade water (Fisher Chemical), and
channel B contained 0.1% TFA in LC-MS grade acetonitrile (Fisher Chemical).
Isocratic elution at 20% channel B was used at a constant flow rate
of 2 μL/min for the entirety of the experiment. The pump was
connected to an externally mounted 6-port two-position Cheminert injection
valve (C72x-669D, VICI Valco, Houston, TX) using a 750 mm × 0.100
mm nanoViper capillary. A 140 mm × 0.100 mm nanoViper capillary
was used as a 1.1 μL sample loop. A 350 mm × 0.025 mm i.d.
× 0.360 mm o.d. fused silica capillary was used to connect the
outlet of the column to a Waters Acquity TUV detector fitted with
a 10 nL nano flow cell (Waters Corporation, Milford, MA) set to 214
nm. An Atlas analog-to-digital converter and Chromeleon version 6.8
software (Thermo) were used to acquire data at 100 Hz.
The yaGfl
standards were injected in triplicate (21 data). The regression results
from data (peak area vs injected concentration) indicated an intercept
indistinguishable from 0 (95% CI of −0.0026 to +0.0049) and
a slope of 0.00575 (95% CI of 0.00566 to 0.00583)
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6

Optimization of LC-MS Analysis for Amino Acid Isomers

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Optima LC-MS grade water and ammonium acetate were purchased from Fisher Scientific (Fair Lawn, NJ, USA). 6-aminocaproic acid, L-norleucine, D-leucine, L-isoleucine, L-allo-isoleucine, N,N-dimethylglycine ethyl ester, and L-leucine were purchased from Sigma-Aldrich (St. Louis, MO, USA). D-tert-leucine, D-allo-isoleucine, L-tert-leucine and D-isoleucine were purchased from Alfa Aesar (Ward Hill, MA, USA). Samples were prepared at an initial concentration of 1 mg/mL and were subsequently diluted in water buffered with 10 mM ammonium acetate (pH 6.5) to a final concentration of 10 μg/mL for analysis. No additional acid was needed to promote protonation. All isomers investigated in this work are summarized in Figure 2.
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7

Protein Mixture Preparation for Mass Spectrometry

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Ubiquitin from bovine erythrocytes, cytochrome c from equine heart, and myoglobin from equine heart were purchased from Sigma-Aldrich (St. Louis, MO, USA). Trimethylamine was purchased from EMD Chemicals (Gibbstown, NJ, USA). HPLC-grade methanol and Optima LC/MS-grade water were purchased from Fisher Scientific (Fair Lawn, NJ, USA), and acetic acid was purchased from Mallinckrodt (Phillipsburg, NJ, USA). Protein stock solutions were prepared at a concentration of approximately 1 mg/mL. Stocks were diluted to a concentration of 1 μM, 2 μM, and 2 μM for ubiquitin, cytochrome c, and myoglobin, respectively, in 49.5/49.5/1, by volume, water/methanol/acetic acid. A simple protein mixture of 1μM cytochrome c and 1 μM myoglobin was prepared in 49.5/49.5/1, by volume, water/methanol/acetic acid.
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8

Lipid Extraction for Gaucher Disease

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The GluCer isoform mixture from the Gaucher spleen (˃98%), galactosylceramide (GalCer) isoform mixture (˃98%), and GluCer(C16:0)D3 were purchased from Matreya (Pleasant Gap, PA, USA). Optima LC/MS grade water and A.C.S. reagent grade ammonium formate (amm. form.) were from Fisher Scientific (Fair Lawn, NJ, USA). HPLC grade methanol (MeOH) and acetonitrile (ACN), and A.C.S. grade acetone were supplied by EMD Chemicals Inc. (Darmstadt, Germany). ReagentPlus grade dimethyl sulfoxide (DMSO) (≥99.5%) and terfenadine were from Sigma-Aldrich (St. Louis, MO, USA) and formic acid (FA) (˃99%) from Acros Organics (Morris Plain, NJ, USA).
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9

Domoic Acid Quantification in Primate Biosamples

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DA powder purified from biological sources was purchased from BioVectra (Charlottetown, PE, Canada) to prepare dosing solutions. Purity of this DA powder was measured by HPLC-MS/MS as described below and the powder was found to be 94% pure. A certified calibration standard solution of DA (332 μM) in acetonitrile/water (v/v 1:19) was purchased from National Research Council Canada (Halifax, NS, Canada). HPLC solvents including Optima LC/MS grade water, methanol, acetonitrile, and formic acid were purchased from Fisher Scientific (Pittsburgh, PA). The analytical internal standard, tetrahydrodomoic acid (THDA), was synthesized as previously described 42 (link). Frozen treatment-naïve monkey plasma and urine were obtained from the Washington National Primate Research Center (WaNPRC) at the University of Washington (Seattle, WA).
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10

Limit of Detection Determination

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Limit of detection (LOD) experiments were run using the LC/MS conditions reported above. Protein samples were twofold serial diluted from 500 to 5 nM in 10 mM Tris (pH 8.0) using Optima LC/MS-grade water (Fisher Scientific, Hampton NH). Injections of increasing concentration were monitored by manual inspection of the chromatogram until a protein peak began to appear (between 0.75 and 0.90 min). The LOD was defined as the first concentration at which the processing parameters below yielded the expected deconvoluted mass.
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