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12 protocols using n tert butyldimethylsilyl n methyltrifluoroacetamide mtbstfa

1

Antioxidant Activity Evaluation Protocol

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Pepsin (activity ≥ 3200 U/mg protein), β-mercaptoethanol (β-ME), 2,2-diphenyi-l-picrylhydrazyl radical (DPPH), 2,2′-azinobis-(3-ethylbenzthiazoline-6-sulfonic acid) (ABTS), 2,4,6-tripyridyl-s-triazine (TPTZ), ferric chloride hexahydrate (FeCl3·6H2O), N-tert-butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA), and 1% tert-butyldimethylchlorosilane (TBDMSCl) were purchased from the Sigma-Aldrich Co. (St. Louis, MO, USA). High molecular weight (MW) markers were obtained from GE Healthcare UK (Aylesbury, UK). Sodium dodecyl sulphate (SDS) and Coomassie Blue R-250 were procured from Bio-Rad Laboratories (Hercules, CA, USA). Sodium chloride and acetic acid were purchased from Merck KGaA (Darmstadt, Germany). Other chemicals and reagents used were analytical grade.
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2

Metabolic Analysis of Liver and Tumor in HCC70 Xenograft Mice

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SCID mice bearing HCC70 tumors were treated with indicated drugs for 2 days and then injected with 99% deuterium oxide (Cambridge Isotope Laboratories, 23.3 mg/g; i.p.). After 2 h, the mice were terminated under anesthesia; the liver and tumor were excised. Samples (10 mg) were extracted with 1 mL of extraction solvent, 3:3:2 acetonitrile, isopropanol, and water. The extraction solvent was pre-cooled at −20 °C. Samples were homogenized by using Genogrinder at 500 × g for 30 s, shaken for 5 min at 4 °C, and centrifuged for 2 min at 20,000 × g. Five-hundred microliters of supernatant was dried overnight. Ten microliters of methoxyamine hydrochloride was added to each dried sample followed by shaking at 30 °C for 1.5 h. Ninety-one microliters of N-tert-Butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA, Sigma-Aldrich, St. Louis, MO) was added to each sample followed by shaking at 70 °C for 60 min for tert butyldimethylsilylation. Agilent 7200 GC-accurate-mass QTOF (Agilent, Santa Clara, CA) was used for data acquisition. Agilent J&W DB-5ms Ultra Inert column was used (Agilent, Santa Clara, CA). The column was held at 60 °C for 0.5 min, ramped to 325 °C at 10 °C/min, and held at 325 °C for 10 min. Raw data were processed by using Agilent Mass Hunter Quantitative Analysis software for QTOF (B. 07.00).
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3

Polar Metabolite and SCFA Analysis

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A total of 205 polar metabolite standards were purchased from Sigma-Aldrich Corp. (St. Louis, MO, U.S.A.), Fisher Scientific (Loughborough, U.K.), and Cayman Chemical (Ann Arbor, MI, U.S.A.). Eight SCFA standards (sodium formate, sodium acetate, sodium propionate, sodium butyrate, isobutyric acid, sodium pentanoate, 2-methylbutyric acid, and isovaleric acid), 2,3,4,5,6-pentafluorobenzyl bromide (PFBBr), methoxyamine hydrochloride (MH), and N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide (MTBSTFA) were purchased from Sigma-Aldrich Corp.
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4

Fatty Acid Analysis Protocol

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Acetic acid was purchased from Thermo Fisher Scientific (Fair Lawn, NJ). Propionic acid, isobutyric acid, butyric acid, 2-methylbutyric acid, isovaleric acid, valeric acid, 2-methylpentanoic acid, 3-methylpentanoic acid, isocaproic acid, caproic acid, 2-methylhexanoic acid, 4-methylhexanoic acid, heptanoic acid, hexanoic acid-6,6,6-d3 internal standard, N-tert-Butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA), and methoxyamine hydrochloride were purchased from Sigma-Aldrich (St. Louis, MO).
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5

Tilapia Skin Preparation for Analysis

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Fish skins were peeled off Tilapia specimens bred in the pilot aquaponics plant of the “Urban Farming Lab” of the Dept. of Innovation Engineering (University of Salento, Lecce, Italy), where they were distributed in glass aquaria filled with dechlorinated water and supported with two oxygen pumps. Skins were harvested when the small (length: 25.0 ± 1.1 cm, height: 9.4 ± 0.9 cm, weight: 320.8 ± 35.8 g, ST) and the big (length: 31.6 ± 0.6 cm, height: 10.9 ± 0.9 cm, weight: 606.7 ± 19.7 g, BT) adult size were reached. Non-fish-skin components (i.e., scales, fillet) were immediately eliminated with a knife. Then, fish skins were rinsed three times with distilled water and stored at −20 °C in polyethylene bag. Prior to use, samples were thawed at 4 °C.
Distilled water was obtained from Millipore Milli–U10 water purification facility from Merck KGaA (Darmstadt, Germany). N, N–dimethylformamide was provided by VWR International PBI S.r.l. (Milan, Italy). Acetic acid, chloroform, methanol, and CaCl2, norleucine, and N–tert–butyldimethylsilyl–N–methyltrifluoroacetamide (MTBSTFA) were purchased from Sigma–Aldrich (Milan, Italy). If not otherwise stated, all other chemicals used were of analytical grade and purchased from Sigma–Aldrich (Milan, Italy).
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6

Immunofluorescence Staining of CRB3 Protein

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2,4-Dichlorophenoxyacetic acid (2,4-D) (CAS no. 94-75-7), para-aminohippuric acid (PAH) (CAS no. 61-78-9), triclopyr (CAS no. 55335-06-3), trimethylsilyldiazomethane (TMSD) (CAS no. 18107-18-1), N-tert-Butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA) (CAS no. 77377-52-7), ethyl acetate, toluene, lucifer yellow, pilocarpine, and other general laboratory chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-CRB3 rat primary monoclonal antibody was purchased from MyBioSource (Cat # MBS588104) and goat anti-rat IgG secondary antibody-Alexa Fluor 488 conjugate was purchased from Invitrogen (Cat # A11006).
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7

Comprehensive Analytical Protocol for PCPs

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Dichloromethane, ethanol, and ethyl acetate were of chromatography quality, purchased from Sigma-Aldrich (Madrid, Spain). Diatomaceous earth (Hydromatrix) was purchased from Agilent Technologies (Madrid, Spain). PTFE centrifuge filters (0.22 μm pore size) were purchased from Ciromfg (FL, USA). Derivatizing agents, N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide (MTBSTFA) and acetic anhydride from Sigma Aldrich (Madrid, Spain), were also used to improve the analytical signal. Neutral alumina (58 Å) was used as a sorbent for the clean-up and provided by Sigma-Aldrich (Madrid, Spain). Silica was activated according to Environmental Protection Agency proceedings (3630c, method EPA). Commercial polydimethylsiloxane (PDMS) stir bars [10 mm × 0.5 mm (length × film)] and a 15-position magnetic stirrer were purchased from Gerstel (Germany).
Standards for BP-3, OC, TCS, and the isotopically labeled internal standard benzophenone- 2,3,4,5,6-d5 were purchased from Sigma-Aldrich (Madrid, Spain). OTNE (synthetic fragrance) was purchased from Bordas Chinchurreta Destilations (Seville, Spain). Triclosan-d3 was purchased from LGC Standards (Barcelona, Spain). Table S1 indicates the main physicochemical properties of these PCPs.
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8

Analytical Methods for Environmental Pollutants

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Standards of 4-n-NP, BPA, BPF, MeP, PrP, ibuprofen, mefenamic acid, carbamazepine, diclofenac, allopurinol and paracetamol (all purity > 97%), NP technical grade (mixture of ring and chain isomers), N-(tert-butyldimethylsilyl)-N-methyl-trifluoroacetamide (MTBSTFA, purity ≥ 95%) with 1% tert-butyldimethylchlorosilane (TBDMCS) were acquired from Sigma-Aldrich (St. Louis, MO, USA). Ultrahigh purity water was obtained from a MilliQ water purification system (Millipore, Spain).
Acetonitrile (ACN), ethyl acetate (EtAc), and methanol (MeOH), for GC residue analysis, were supplied by Aldrich (Steinheim, Germany). Formic acid (purity ≥ 98%) was acquired from Acros Organics (Geel, Belgium). Ammonium hydroxide (NH4OH, ≥32%) and primary secondary amine (PSA) bulk adsorbent were purchased from Scharlab (Barcelona, Spain).
Individual stock solutions (1 mg/mL) of each compound were prepared in ACN, except for diclofenac and paracetamol that were prepared in ACN:MeOH (90:10 v/v), allopurinol in dimethyl sulfoxide and mefenamic acid in EtAc. A working mixture solution at 1 μg/mL was prepared in ACN (except for carbamazepine and diclofenac that were at 4 μg/mL due to their low MS response). All the standard solutions were stored in amber vials at −20°C prior to use.
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9

Acrylamide Quantification in Cereal Grains

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Standards of acrylamide (≥99.5%), D3-acrylamide (500 mg L−1 in acetonitrile), and asparagine (99%), as well as both GC-grade derivatization reagents xanthydrol (≥99%) and N-tert-butyldimethylsilyl-N-methyltrifluoroacetamide (MTBSTFA) (≥99%) with 1% tert-butyldimethylsilyl chloride (TBDMSCI), were obtained from Sigma Aldrich (Schnelldorf, Germany). For pH adjustments, Na2CO3 and acetic acid (80%) were purchased for VWR (Vienna, Austria).
Analytical-Grade fructose, glucose, maltose, and sucrose were purchased from Sigma Aldrich. LC-MS-grade acetonitrile and ammonium acetate, as well as ammonia (25%), were obtained from VWR. GC-MS grade ethylacetate, hexane, HCl (37% p.A.) and Carrez I and Carrez II solutions were purchased from VWR. Sample cleanup was performed using J.T. Baker BAKERBOND spe C18 polarplus 1 mL SPE (solid phase extraction) columns (Schwerte, DE). LC-MS-grade water (<0.055 μS cm−1) from a Sartorius ultrapure water purification system (Göttingen, Germany) was used for sample preparation.
The grain and rye varieties (Secale cereale) used were obtained from Arnreiter Mühle GmbH (Wallern a der Trattnach, Austria), Plohberger Malz GmbH (Grieskirchen, Austria), and Saatgut Erntegut GmBH (Linz, Austria). Asparaginase (EC 3.5.1.1, hydrolase) was purchased as PreventAse (product #23156) from DSM (Heerlen, Netherlands), and CaCl2 was purchased from Solvay (Brussels, Belgium).
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10

Development of Pesticide Analysis Protocol

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Acetonitrile (ACN), n-hexane, and toluene of HPLC quality were purchased from Sigma-Aldrich (St. Quentin Fallavier, France).
Standards of 50 individual pesticides of Pestanal® quality (>99% purity) and N-tert-butyldimethylsilyl-N-methyltrifluoroacetamide (MtBSTFA) were purchased from Fluka (Sigma Aldrich, St. Quentin Fallavier, France), Dr Ehrenstorfer GmbH (Cluzeau Info Labo, Sainte-Foy-la-Grande, France), or Riedel de Haën (Sigma Aldrich, St. Quentin Fallavier, France). A mixture of these pesticides (SM1) was prepared at 10 mg L–1 in ACN and stored at −18 °C. The list of pesticides under study is summarized in Supplementary Material S2.
Five internal standards (IS) were used, including trifluralin d14, nitrophenol d4, pp’-DDE d8, pp’-DDT d8, sand trans-cypermethrin d6. These ISs were obtained from Sigma-Aldrich (L’Isle d’Abeau, France) and Cambridge isotope laboratories (Cluzeau Info Labo, Sainte-Foy-la-Grande, France). A mixture of these ISs at 10 mg L−1 in ACN were prepared and used for the quantification of the 50 assessed pesticides.
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