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16 protocols using cd45 viogreen

1

Immune Cell Profiling in Mammary Tumors

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The same two mammary glands or two lobes of the right lung were harvested from each PyMT mouse or A/J mouse, respectively, for flow cytometry. Fresh tissues were homogenized and incubated in digestion media containing 300 U/ml collagenase (Sigma), 1 U/ml dispase (Worthington), and 2 U/ml DNAse (EMD Millipore) for 30 minutes at 37°C. Cells were passed through a 40 μm cell strainer (Falcon) to obtain a single cell suspension and treated with a lysing solution (eBioscience) to eliminate red blood cells. Cells were then stained with 5 μg/ml anti-mouse Fc block (Biolegend) and two panels of validated antibodies(23 (link)) for 30 minutes on ice. Panel 1: CD45-VioGreen (3 μg/ml, Miltenyi), Gr-1-PE (3 μg/ml, Miltenyi), CD11b-FITC (3 μg/ml, Miltenyi). Panel 2: CD45-VioGreen (3 μg/ml, Miltenyi), CD3-PE (2 μg/ml, BioLegend), CD4-FITC (3 μg/ml, Miltenyi), CD8-PerCP/Cy5.5 (2 μg/ml, BioLegend), CD25-PE/Cy7 (2 μg/ml, BD Biosciences). Flow cytometry was performed using a LSR II flow cytometer with three laser sources (488 nm, 633 nm, 407 nm) and DIVA 6.2 software (BD); data were analyzed by FlowJo x.10.0.7r2 software (Tree Star).
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2

Immune Profiling of Murine Breast Tumors

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Brca1Co/Co;MMTV-Cre;p53+/- mice (N=5/group) with established tumors (4-5 mm in diameter) were treated for five doses (three times a week) and then tumor, spleen and mammary gland were collected and digested for flow cytometry as published previously 32 (link). Panel 1: CD45-VioGreen (Miltenyi, 3 μg/mL), Gr-1-PE (Miltenyi, 3 μg/mL), CD11b-FITC (Miltenyi, 3 μg/mL), CD19-PerCP/Cy5.5 (BioLegend, 2 μg/mL). Panel 2: CD45-VioGreen (Miltenyi, 3 μg/mL), CD4-FITC (Miltenyi, 3 μg/mL), CD3-PE (BioLegend, 2 μg/mL), CD8-APC (BioLegend, 2 μg/mL), CD25-PE/Cy7 (BioLegend, 2 μg/mL).
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3

Pancreatic and Splenic Cell Isolation and Analysis

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One third of the pancreas and spleen removed from KC mice was minced and incubated separately in digestion media consisting of collagenase (300 U/ml, Sigma), dispase (1 U/ml, Worthington), and DNAse (2 U/ml, Calbiochem) for 30 minutes at 37 °C with stirring. Cells were then passed through a 40 µm cell strainer (BD Falcon), and red blood cells eliminated with lysing solution. Single cells were resuspended in a solution of PBS/0.5% BSA/0.1% azide and stained for 30 minutes at 4 °C with the following antibodies: CD45-VioGreen (30F11, Miltenyi), Gr-1-PE (RB6-8C5, Miltenyi), CD11b-FITC (M1/70.15.11.5, Miltenyi), CD19-APC (1D3/CD19, Biolegend), B220-PerCP-Cy5.5 (RA3-6B2, Biolegend), CD3-PE (145-2C11, Biolegend), CD4-FITC (Gk1.5, Miltenyi), CD8-APC (53–6.7, Biolegend) and 5 μg/ml anti-mouse CD16/CD32 antibody (Biolegend) to reduce antibody binding to Fc receptors. Propidium iodide staining was used to exclude dead cells. Cells were analyzed using an LSR II-DIVA 6.2 software (BD) with three laser sources (488 nm, 633 nm, 407 nm) and FlowJo x.10.0.7r2 software (Tree Star).
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4

Tumor Tissue Dissociation and Cell Isolation

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Tumor tissues collected from mice at the end of in vivo study were processed on gentleMACS Dissociator (Miltenyi Biotec, 130-096-427) using tumor isolation programs twice, between which was 40 minutes of incubation at 37°C with continuous rotation. Then, cell suspension was applied to 30 µm MACS SmartStrainers (Miltenyi Biotec, 130-098-458) and washed with medium. Collected cells were centrifuged and used for staining as described above. Antibodies CD45-VioGreen (130-123-900) and CD73-APC-Vio770 (130-102-329) were purchased from Miltenyi Biotec.
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5

Immunophenotyping of PBMCs from Obese Children

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PBMCs isolated from 13 obese children (6 male, 7 women) were treated with Ctrl, EVOO and olive oil extracts for 24 h. After the treatment, PBMCs were detached from the plate with cold D-PBS 1X (Gibco, New York, NY, USA) + 0.5 mM EDTA (Thermo Fisher Scientific, Waltham, MA, USA), washed with D-PBS 1X + 2 mM EDTA (Thermo Fisher Scientific, Waltham, MA, USA) + 0.5%BSA (Sigma-Aldrich, St Louis, MO, USA), and stained with CD14 FITC/CD64 PE (Becton, Dickinson and Company, OR, USA, REF:333179), CD16 APC and CD45 VioGreen® (Miltenyi Biotec, Bergisch Gladbach, Germany, REF:130-113-951 and REF:130-110-776, respectively) according to the manufacturer’s instructions. To test cell viability, 7-AAD PerCP-Cy5.5 (7-Aminoactinomycin D, Becton, Dickinson and Company, OR, USA) was used. Flow cytometer acquisition was performed using the FACSCanto II flow cytometer (Becton, Dickinson and Company, OR, USA), and data were analyzed using Diva software, version 8.0.1 (Becton, Dickinson and Company, OR, USA). Gating strategy: after the selection of single and live cells from PBMCs, cells were checked for positivity to CD64 and CD45 (each marker vs. side scatter). CD64+ CD45+ cells were analyzed for the expression of CD16 and CD14 by a dot plot (Supplementary Figure 1).
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6

Flow Cytometry Immunophenotyping Panel

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MACSQuant Analyzer, MACSQuant Analyzer VYB (Miltenyi Biotec), or FACSCanto, LSRII (Becton Dickinson, NJ) was used to analyze cell populations by flow cytometry. The following antibody and protein conjugates were used: CD3-PE, CD3-APC-Vio770, CD4-APC, CD4-VioGreen, CD8-APC-Vio770, CD8-VioGreen, CD14-APC, CD16-PE, CD19-APC, CD20-PerCP-Vio770, CD20-PE-Vio770, CD34-APC, CD34-PE, CD45-VioBlue, CD45-VioGreen, CD45RO-PE-Vio770, CD56-PE, CD62L-VioBlue, CD95-APC, CD45-VioBlue (mouse) (all from Miltenyi Biotec); ErbB2-Fc fusion protein (R&D Systems), anti-human-IgG (Fc gamma-specific) PE (eBioscience). 7AAD staining was used for dead cell exclusion and Violet Cell Trace (Thermo Fisher) for SupT1 cell tracking.
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7

Enrichment and Expansion of CD34+ Cells

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Peripheral blood (PB) from healthy blood donors (HBDs) and from AL patients were obtained after informed consent. The study was approved by the Medical Ethics Committee of the Canton Geneva (study no. 08-001 and 2020-00176). Diagnosis and clinical and laboratory characteristics of leukemia patients are detailed in Table S1. CD34+ cells were enriched using the UltraPure CD34 Microbead kit (Miltenyi Biotec, Bergisch Gladbach, Germany, #130-100-453) and magnetic-activated cell-sorting separation columns (Miltenyi Biotec, #130-042-201). CD34+ cell viability and purity were assessed by flow cytometry after staining cells with CD34-PE-Vio770 (Miltenyi Biotec, clone: AC136, #130-113-180), CD45-VioGreen (Miltenyi Biotec, clone: REA747, 130-110-638), and 7-Amino-Actinomycin D (7-AAD) viability dye for live/dead cell discrimination (Beckman Coulter, Brea, California, CA, USA, #B88526). Samples were analyzed on a Navios 10-color flow cytometer (Beckman Coulter, Brea, CA, USA) and the data interpreted with the Kaluza software (Analysis Version 2.1, Beckman Coulter). CD34+ cells were subsequently cultured in StemSpanTM SFEM II serum-free medium (STEMCELL Technologies, Vancouver, BC, Canada, #09605), supplemented with Flt3L, IL-3, IL-6, SCF and TPO (StemSpanTM CD34+ expansion supplement; STEMCELL Technologies, #02691).
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8

Flow Cytometry Immune Cell Profiling

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Anti-VISTA antibodies and isotype control (Human IgG1 Isotype control, Bio X Cell BP0297) were labeled with Alexa Fluor 647 using the protocol in the conjugation kit (Biotium). Monocytes, T-cells, and Neutrophils were labeled in a human blood sample (BIOIVT) by flow cytometry using CD45-VioGreen (130-110-638), CD3-PE-Vio 770 (130-113-140), CD16-Vio Bright B515 (130-119-616) and CD14-PE (130-113-147) in the presence of FcR Blocking Reagent (130-059-901; all reagents from Miltenyi Biotec and antibodies diluted 50-fold as per manufacturers recommendation). Samples with appropriate FMO (Fluorescence Minus One) controls for each antibody were analyzed in parallel. RBC were lysed using Lysis Buffer (BD Biosciences 555899). Samples were washed in 1x PBS pH7.4 containing 1% heat inactivated fetal bovine serum, and propidium iodide (PI) staining (Miltenyi 130-093-233) for Live/dead cell discrimination done immediately before analysis using a MACS Quant Analyzer (Miltenyi). For NK cells, isolated human NK cells (Hemacare/Charles River Labs) were stained with labeled anti-VISTA or isotype control mAbs and CD56-FITC (Miltenyi 130-114-740; 50-fold diluted) in MACSQuant Running Buffer (Miltenyi 130-092-747), and Sytox Blue (Thermo Fisher Scientific S34862) was used for gating for live cells.
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9

Multi-Parameter Flow Cytometry Analysis

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Flow cytometry was performed on a 4-laser BD LSRII (BD Biosciences), with subsequent analysis executed using FlowJo v.10 (TreeStar). Cells were stained according to the manufacturer’s instructions with Mouse TCR β constant-APC (clone H57-597, BioLegend, catalog no. 109211), Human TCRα/β PerCP-Vio 700 (clone REA652, Miltenyi Biotec, catalog no. 130-113-540), PD1-PE (clone PD1.3.1.3, Miltenyi Biotec, catalog no. 130-117-384), CD4-VioBlue (clone REA623, Miltenyi Biotec, catalog no. 130-114-534), and CD45-VioGreen (clone REA747, Miltenyi Biotec, catalog no. 130-110-638).
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10

FACS Analysis of Experimental EBA

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For FACS analysis, healthy and lesional skin (both from corresponding anatomical sites) or blood was taken from mice after induction of experimental EBA. Single cell solutions from and blood were erythrocyte lysed with RB cell lysis buffer (Miltenyi). The skin samples were cut into small pieces and digested with 345 mg/ml liberase (Roche) in RPMI for 30 min/37°C. Single cells were stained for the following surface markers using standard FACS procedures: CD45-VioGreen (clone: 30F11), CD3-VioBlue (clone: 17A2), Ly6C-FITC (clone: 1G7.G10), as well as Ly6G-APC Vio770 (clone: 1A8) and for blood CD19-APC (clone: 6D5), all from Miltenyi. For the subsequent intracellular staining, the cells were fixed in fixation buffer (BioLegend) and permeabilized using the Intracellular Staining Perm Wash Buffer (BioLegend) following the manufacturer’s protocol. Intracellular staining was performed with SYK-PE (clone: 4D10.2). Cells were first gated for scatter (SSC-A/FSC-A) and singlets (FSC-H/FSC-A). The CD45+ gates were further analyzed for double-positive staining of SYK with the appropriate cell markers. Measurements were performed at the Miltenyi MacsQuant10, and data were analyzed with the MACSQuantify™ Software (version 2.8).
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