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29 protocols using image pro plus 6.0 system

1

Quantifying Neuronal Activation Markers

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The slides were visualized with the images of the bilateral stained nuclei or areas under a light microscope (Nikon ECLIPSE 80I, Nikon Corporation, and Tokyo, Japan), and 3 fields of each nucleus or brain area on each side were observed with a 20 × objective lens. The numbers of c-Fos-like immunoreactive (c-Fos-IR) neurons or c-Jun-like immunoreactive (c-Jun-IR) neurons were counted with the Image-Pro plus 6.0 system (Media Cybernetics, Inc., Bethesda, MD, USA). The mean values calculated from each nucleus or brain area represented the c-Fos-IR or c-Jun-IR positive neurons per goat.
Statistical analysis was undertaken with SPSS 17.0 software (SPSS Inc., Chicago, USA). Data from the study were subjected to one-way ANOVA, followed by Bonferroni's post hoc test. Statistical significance was evaluated by determining whether P ≤ 0.05. All data are presented as the mean ± SD.
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2

Histological Analysis of Cardiac Tissue

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The hearts and cells were fixed with 4% paraformaldehyde and embedded in paraffin. CFs and NRVMs were permeabilized in 0.2% Triton X-100 in PBS. Deparaffinized sections (6-um thickness) were stained with Masson’s trichrome, Hematoxylin and Eosin (HE) or TUNEL. Deparaffinized sections (6-um thickness) or CFs were stained with primary antibodies overnight at 4°C with anti-α-SMA and/or anti-Vimentin or HIF-1α, and NRVMs were stained with anti-caspase-3, respectively, followed by the secondary antibody for 2 h at 37°C. Nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). The negative controls lacking the primary antibody were included. Fluorescence images were captured by the fluorescent microscope (BX51 systems, Olympus, Tokyo, Japan). Semiquantitative analysis of the tissue staining images was performed using the Image-Pro Plus 6.0 System (Media cybernetics, USA).
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3

Quantifying Liver Protein Expression

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Western blot analysis was used to detect JNK, p-JNK, caspase-3, BCL-2, and BAX expression levels in the liver tissues. Briefly, total protein from the liver was extracted using the radioimmunoprecipitation assay buffer via a standard procedure, and the protein concentration was determined using the BCA protein assay kit. All the proteins were separated using 10% SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were blocked with 5% bovine serum albumin for 60 min, followed by overnight incubation with the primary antibodies against JNK, p-JNK, caspase-3, BCL-2,BAX, and b-actin (1:500 dilution) at 4°C. The membranes were then washed three times with Tris-buffered saline-Tween and incubated with the appropriate secondary antibody at a dilution of 1:500 for 120 min. Proteins were detected using an enhanced chemiluminescence reagent, Merck Millipore, Co., Ltd., Beijing, China. The densitometric quantification of the bands was carried out using Image-Pro Plus 6.0 system (Media Cybernetics, Shanghai, China) and expressed relative to b-actin.
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4

Histological Analysis of Bone and Synovium

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Animals were sacrificed after three or six weeks of treatment. The tibia and femur were dissected and fixed in 4% paraformaldehyde for 24 h, decalcified in 10% ethylenediamine tetraacetic acid (EDTA) and embedded in paraffin. Tissue sections (4 μm) were mounted on common slides for staining with hematoxylin and eosin, toluidine blue and Masson’s trichrome as described previously (16 (link),17 (link)). Cartilage histopathological features were analyzed using the scoring system modified by Mankin et al (18 (link)) (score range 0–12, from normal to complete disorganization and hypocellularity). Synovium histopathology was evaluated according to Yoshimi’s histological grading (score range 0–18, between normal and most severe reaction) (19 (link)). The Image-Pro Plus 6.0 System (IPP) image analysis system (Media Cybernetics, Rockville, MD, USA) was used for quantitative analysis. The positive index was calculated as the integral of the optical density. All sections were randomized and evaluated by a trained observer who was blinded to the treatment groups.
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5

Immunohistochemical Analysis of CGRP Positive Cells

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The DRG fixed in 4% buffered formaldehyde was embedded in paraffin. The tissue block was sectioned at a thickness of 4-μm, and mounted on poly lysine coated slides. Four serial slides were deparaffinized and rehydrated sequentially, followed by the Streptavidin–Biotin Complex immunohistochemistry procedure as follows. The serial slides were incubated with rabbit-anti-CGRP (Abcam Inc., Cambridge, MA-02139-1517, USA; 1:100 diluted in PBS), and PBS (the negative control), respectively, and, sequentially, for 24 h at 4°C. Then, they were treated with secondary antibodies (SA1022-anti-rabbit IgG Kit, Wuhan Boster Biological Technology Ltd., Wuhan, China). Avidin-biotin complex Staining (Wuhan Boster Biological Technology Ltd., Wuhan, China) was visualized with diaminobenzidine (DAB) for 1 min at room temperature. All sections were dehydrated in graded ethanol series, made transparent in xylene, coverslipped, and air-dried. The slides were visualized with the images of the stained areas under a light microscope (Nikon ECLIPSE 80I, Nikon Corporation, and Tokyo, Japan), and 3 fields of each slide were observed with a 20 × objective lens. The numbers of CGRP positive cells were counted with the Image-Pro plus 6.0 system (Media Cybernetics, Inc., Bethesda, MD, USA). The mean values calculated from three sections represented the CGRP positive cells per rat.
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6

Quantifying Plasmid Transfection Efficiency

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In order to determine the plasmid transfection efficiency, the muscle and synovial samples of rats in each group were stained with DAPI (1 µg/ml) for 5 min at room temperature and the expression of EGFP was evaluated. A total of ten fields of view for each section were selected at random and observed using a fluorescence microscope (Nikon ECLIPSE TE2000-U; Nikon Corporation, Tokyo, Japan). The Image-Pro Plus 6.0 system (Media Cybernetics, Inc., Rockville, MD, USA) was used to measure the mean fluorescence intensity. The mean value of three measurements was used for statistical analysis.
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7

Immunohistochemical Analysis of TNF-α

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Tissue sections were deparaffinized and rehydrated prior to IHC analysis. A total of 100 µl 10% goat serum (cat. no. SP-KIT-B3; Fuzhou Maxim Biotechnology Development Co., Ltd., Fuzhou, China) was added to each section for blocking for 15 min at room temperature. Samples were incubated with anti-TNF-α antibody (1:100; cat. no. ab220210; Abcam, Cambridge, UK) at 4°C overnight. The horseradish peroxidase conjugated goat secondary antibody (100 µl Bottle A from the ChemMate Envision; cat. no. K5007; Dako Agilent Technologies, Inc., Santa Clara, CA, USA) was added and incubated at 37°C for 45 min. DAB working liquid was then added and staining was observed under a light microscope (magnification, ×100). The sections were then observed using a light microscope (Olympus BX51; Olympus Corporation) and five random fields were selected. The Image-Pro Plus 6.0 system (Media Cybernetics) was used to measure the mean density of TNF-α staining, and the mean values were calculated and used for statistical analysis.
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8

Histomorphometric Analysis of Liver Fibrosis

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Samples were taken from the same part of the livers of BA mice, fixed in 10% formalin, embedded in paraffin, and routinely sectioned, followed by hematoxylin and eosin (HE) staining, as well as Masson staining to observe the histological changes and collagen fiber distribution in the liver, respectively. The area, perimeter, mean optical density, integral optical density, and mean grayness of liver collagen fibers were quantified by the Image-Pro Plus 6.0 system (Media Cybernetics, Rockville, MD, United States) according to the criteria for staging pathological liver fibrosis in China (18 (link)). The degree of liver fibrosis was assessed by measuring the hydroxyproline content of the samples by the acid hydrolysis method (19 (link)).
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9

Immunohistochemical Analysis of ZMIZ2

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The paraffin sections (4-μm-thick) were soaked in 3% H2O2 for 10 min after dewaxing with xylene and alcohol baths. The sections were then soaked in antigen retrieval solution for 5 min. Then, PBS with 10% sheep serum (Gibco, Grand Island, NY, USA) was added to the section to block the non-specific sites. The primary antibody against ZMIZ2 (Abclonal) was added and then incubated at 4 °C overnight, followed by the incubation with the corresponding secondary antibody (Bioss). The images (200 × magnification) were photographed and the positive area density was analyzed using an Image-Pro Plus 6.0 System (Media Cybernetics Corporation, USA).
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10

Measuring Brain Infarct Volumes

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Coronal slices (thickness: 2 mm) were obtained and stained at 37°C for 30 minutes in 2% triphenyltetrazolium chloride (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) to calculate the brain infarct volumes. Infarct volume was detected using image analysis software (Image Pro plus 6.0 system; Media Cybernetics, Inc., Rockville, MD, USA). Infarct and noninfarct areas were traced using the photographs of triphenyltetrazolium chloride-stained brain slices (ImageJ 1.48; National Institutes of Health, Bethesda, MD, USA). Firstly, the swelling area was calculated according to the following formula: ipsilateral hemisphere area-contralateral hemisphere area. The infarct area was evaluated with the following formula: infarct area (%) = (contralateral area-[ (ipsilateral areaswelling area) -ipsilateral noninfarct area)] /contralateral area.
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