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29 protocols using ab31392

1

Immunohistochemical Analysis of HSP90 and PTEN in MF-CCA

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Hematoxylin and eosin (H&E)-stained slides from each case were reviewed. Specimens from MF-CCA patients who had undergone hepatectomy were fixed in formalin and embedded in paraffin. A 4-μm section was stained for HSP90 and PTEN. Primary antibodies against HSP90 (#3098-100, 1:200 dilution; BioVision, Mountain View, CA) and PTEN (#ab31392, 1:100 dilution; Abcam, Cambridge, UK) were added to the slides, and the slides were incubated overnight at 4°C. The slides were then washed in TBST 3 times for 5 min each before visualization with the DAKO LSAB2 System, Peroxidase (no K0675; DAKO A/S, Glostrup, Denmark). Control slides were incubated with the secondary antibody only. After washing in TBST 3 times for 5 min each, the slides were mounted. The slides were analyzed blindly under microscopy, and the expression in the cholangiolar epithelium was classified as low or high according to the following: negative (< 1% cytoplasmic staining), 1+ (1%–20% cytoplasmic staining), 2+ (21%–50% cytoplasmic staining), or 3+ (> 50% membranous staining). Negative and 1+ immunostaining were arbitrarily classified as low expression, while all others were classified as high expression.
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2

Western Blot Analysis of Protein Markers

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Total protein was extracted from the brain tissue from the rats in each study group using RIPA buffer (Santa Cruz Biotechnology, Inc.) containing a protease inhibitor (Sigma-Aldrich, St. Louis MO, USA). A bicinchoninic acid (BCA) assay kit (Beyotime, Shanghai, China) was utilized for conducting quantitative analysis of protein concentrations. About 40 μg protein sample was separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gels and electrophoresis and then transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). After treating with 5% skimmed milk, primary and secondary antibodies were utilized to incubate the membranes for 1.5 h. Enhanced chemiluminescence (ECL) (Bio-Rad, Hercules, CA, USA) was used to visualize the blots. Primary antibodies used were to Notch1 (1: 1000) (ab65297; Abcam, Cambridge, MA, USA), PTEN (1: 1000) (ab31392; Abcam, Cambridge, MA, USA), Nestin (1: 1000) (ab22035; Abcam, Cambridge, MA, USA), and GAPDH (1: 2000) (ab9482; Abcam, Cambridge, MA, USA).
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3

Immunohistochemical Analysis of PTEN

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Following formalin fixation and dehydration in ethanol, tissues were embedded in paraffin and prepared as 5 µm thick sections. The sections were blocked in 5% normal goat serum and were incubated in turn with rabbit anti-PTEN polyclonal antibody (1:800; ab31392, Abcam, Cambridge, UK) and goat anti-rabbit IgG (Alexa Fluor 594, Invitrogen). The sections were observed under a phase-contrast light microscope (Olympus) and photographed. Integrated optical density (IOD) was calculated using Image-Pro Plus software.
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4

Quantification of PTEN and GAPDH Proteins

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The isolation of total protein from UWB1.289 cells was performed using RIPA buffer (Invitrogen). Protein concentrations were measured by performing BCA assay (Invitrogen). Protein samples were denatured in boiling water for 10 min, followed by separation of proteins using SDS-PAGE gel (8%). Proteins were transferred to PVDF membranes, followed by blocking in PBS containing 5% non-fat milk for 2 h at 25 °C. The blocked membranes were first incubated with rabbit primary antibodies of PTEN (ab31392,Abcam) and GAPDH (ab9485, Abcam) at 4 °C for 20 h, followed by incubation with secondary antibody of lgG-HRP (ab6721, Abcam) for 2 h at 25 °C. After that, signals were developped using ECL™ Select Western Blotting Detection Reagent (Sigma-Aldrich). Image J v1.48 software was used to normalize signals.
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5

Protein Expression Analysis in AC16 Cells

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After transfection and HR treatments, AC16 cells were collected and lysed in 1 × ice-cold RIPA lysis buffer (#P0013B, Beyotime, Shanghai, China). The protein was quantified with the BCA kit (#T9300A, Takara, Dalian, China). A total of 35 μg proteins was separated by electrophoresis on 10% SDS-polyacrylamide gel (PAGE) and transferred onto polyvinylidene difluoride (PVDF) membrane. The membranes were blocked with 1 × Tris-buffered saline with Tween (TBST) containing 5% nonfat milk for 1 h at room temperature and incubated with specific primary antibodies from Abcam (anti-Bcl2, #ab59348, 1:1000; anti-Bax, #ab53154, 1:1000; anti-cleaved caspase 3, #ab2302, 1:1000; anti-PTEN, #ab31392, 1:1000; anti-PI3K, #ab70912, 1:1000; anti-p-PI3K, #ab182651, 1:1000; anti-AKT, #ab8805, 1:1000; anti-p-AKT, #ab8933, 1:1000; anti-β-actin, #ab8227, 1:1000) at 4 ℃ overnight. After wash, the membranes were then incubated with the corresponding secondary antibodies for 2 h at room temperature. Finally, the blot was incubated with ECL plus reagent (#32109, Pierce, Rockford, IL, USA) and visualized using charged-coupled device LAS 4000 (Fujifilm, Valhalla, NY, USA) and photographed. All antibodies were purchased from Abcam (MA, USA) and diluted as suggested by the manufacturer.
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6

Western Blot Analysis of EYA2, PTEN, and GAPDH

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Western blot analysis was performed as previously described [58 ]. Briefly, cells were lysed in cold lysis buffer, proteins (20–30 μg) were resolved on SDS-PAGE, transferred onto PVDF membranes, and probed with antibodies for EYA2 (ab95875, Abcam), PTEN (ab31392, Abcam), and GAPDH (sc-32233, Santa Cruz Biotechnology) at 4°C overnight. Detection was performed with the SuperSignal West Femto Maximum Sensitivity Substrate Trial Kit (Pierce, Rockford, IL, USA). The band images were digitally captured and quantified with a FluorChem FC2 imaging system (Alpha Innotech, San Leandro, CA, USA). Protein levels were normalized to GAPDH and quantified with respect to vector control group.
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7

Profiling Protein Expression in NSCLC

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Whole-cell lysates were prepared from human NSCLC cell lines after harvesting and centrifuging. Protein concentrations were quantified using BCA kit (Beyotime Bio, Shanghai, China). The proteins were denatured, electrophoresed (SDS-PAGE gel Kit, Beyotime Bio, Shanghai, China), and then transferred to PVDF membranes (Millipore Co., MA, USA). Subsequently, the PVDF membranes were blocked with non-fat milk powder, incubated with primary and secondary (HRP-labeled goat anti-rabbit IgG) antibodies, and visualized (Bio-Rad Image Lab Software).
Western blotting was performed using the primary antibodies, anti-SH2B1 (1:1000, ab196575, Abcam), anti-Akt (1:600, ab8805, Abcam), anti-Akt (phospho S473) (1:300, ab8932, Abcam), anti-mTOR (1:1500, ab2732, Abcam), anti-mTOR (phosphor S2448) (1:1000, ab109268, Abcam), anti-PTEN (1:600, ab31392, Abcam), anti-C-Myc (1:1000, ab32072, Abcam), antibodies (Abcam, Cambridge, MA, USA), and anti-GAPDH antiboty (1:3000. D110016, Sangon Biotech, Shanghai, China). Following the initial western blotting assay, the membranes were stripped and the band intensities were relative to GAPDH. The quantification of protein bands was performed using Image J software.
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8

Immunohistochemical Analysis of PTPN14 and PTEN

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Paraffin-embedded sections of tumor tissues were stained for PTPN14 and PTEN expression. Immunohistochemistry (IHC) and the scoring system for PTPN14 (1:200, SAB2700311, Sigma-Aldrich, USA) and PTEN (1:100, ab31392, Abcam, UK) were performed as we previously described [50 (link)].
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9

Brucine-induced Apoptosis Pathway

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The main reagents used in the study were brucine (Chengdu Manster Biotechnology Co. Ltd., China), RPMI-1640 medium (Hyclone, USA), fetal bovine serum (FBS) (Zhejiang Tianhang Biotechnology Co. Ltd., China), an methodology of tetrazolium (MTT) cell viability assay kit (Nanjing Jiancheng Biotechnology Co., Ltd., China), anti-HSP70 antibody (ab30342; Abcam, USA), anti-apoptotic protease activating factor 1 (Apaf-1) antibody (ab31392; Abcam, USA), anti-cysteine protease-3 (caspase-3) antibody (ab31383; Abcam, USA), and β-actin rabbit anti-polyclonal antibody (ab33563; Abcam, USA).
The equipment used included a CO2 cell incubator (Thermo Scientific, Germany, model BB-15), a multifunctional biological microscope (Olympus Optical Ltd., Japan, model OLYMPUS BX-51), a tabletop high-speed frozen centrifuge (Eppendorf, Germany), and an enzyme labeler (Thermo Scientific, Thermo MULTISKANFC, Germany).
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10

PTEN Western Blot Analysis

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RIPA solution (Invitrogen, California, USA) and BCA assay were used for protein extraction and quantification, respectively. Protein samples were first denatured in boiling water for 5 min, followed by separation using 7% SDS-PAGE gels. After gel transfer and blocking, incubation with PTEN (ab31392, Abcam, Hangzhou, China) or GAPDH (ab8245, Abcam, Hangzhou, China) primary antibodies was done at 4°C for overnight. Then, HRP IgG secondary antibody (ab6721, Abcam, Hangzhou, China) was used to incubate the membranes at room temperature for 3 h. ECL (ab65623, Abcam, Hangzhou, China) was used for the production of signals. Quantity One software was used for signal normalizations.
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