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8 protocols using immunomagnetic negative selection kit

1

Isolation of Classical Monocytes

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Monocytes were isolated as previously described [16 (link)] from 8 to 16 ml EDTA-treated whole blood using an immunomagnetic negative selection kit (StemCell Technologies, Vancouver, CAN). Subjects fasted overnight prior to each blood collection. Our previous work [16 (link)] demonstrated that aging had no impact on monocyte purity resulting from the isolation process, with both groups averaging around 90% purity by CD14 staining and flow cytometry. The isolation kit includes CD16 depletion, thus only classical monocytes are isolated, which was confirmed by flow cytometry in our previous publication [16 (link)]. We conducted all downstream assays or lysed cells immediately after cell isolation; no cells were frozen for later analysis.
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2

Isolation and Propagation of Human Cell Lines

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Cell lines were purchased from ATCC: HT29 colorectal cell line and Raji lymphoma cell line. Cells were propagated in the media recommended by the vendor, supplemented with 10% FBS. Human pan-T cells were isolated from fresh Leukopaks (Stemcell Technologies, #70500) using an immunomagnetic negative selection kit (Stemcell Technologies, 17951). Cells were analyzed on FACS for purity and viability and frozen into single use vials.
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3

T Cell Activation and Signaling Pathway

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T cells were isolated from PBMCs using an immunomagnetic negative selection kit (StemCell Technologies, Vancouver, British Columbia, Canada), stained with anti-CD3 and anti-CD28 antibodies (1 μg/mL; BioLegend), and crosslinked with goat anti-mouse IgG (10 μg/mL, BD Biosciences) for stimulation at 37 °C. Cells were washed with cold phosphate-buffered saline (PBS) immediately and lysed in RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China) containing protease inhibitor cocktail (Sigma–Aldrich, St. Louis, MO, USA) and PhosSTOP (Roche, Basel, Switzerland). Approximately 20 μg total protein was resolved in 8% acrylamide/bis gels, transferred to polyvinylidene fluoride membranes, and probed with the following antibodies: anti-p110δ (#34050), anti-AKT (#9272), anti-phospho-AKT S473 (#4060), and anti-β-actin (#12620). Horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (#7074) was used as the secondary antibody. All antibodies were purchased from Cell Signaling Technology. Band intensities were quantified using ImageJ software (NIH, Bethesda, MD, USA).
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4

Isolation and Expansion of CD8+ T Cells

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CD8+ T cells were isolated directly from whole blood using an immunomagnetic negative selection kit (Stemcell Technologies, Canada) according to manufacturer’s protocol. The isolated CD8+ cells were cultured in ImmunoCult™-XF T Cell Expansion Medium supplemented with ImmunoCult™ Human CD3/CD28/CD2 T Cell Activator for 9 days, with medium changing every 2–3 days and density adjusted according to manufacturer’s recommendations (Stemcell Technologies, Canada).
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5

Differentiation of Naïve CD4+ T Cells

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Naïve CD4+ T cells were isolated from PBMCs using an immunomagnetic negative selection kit (Stemcell Technologies, Canada). The isolation was performed according to the manufacturer’s protocol. At the end of isolation, the naïve CD4+ T cells fraction was divided into 3 portions. Each portion was cultured in ImmunoCult™-XF T Cell Expansion Medium supplemented with ImmunoCult™ Human CD3/CD28/CD2 T Cell Activator and the differentiation supplement cocktail for T helper 1 cells (Th1), T helper 2 cells (Th2), and T regulatory cells (Treg) respectively (Stemcell Technologies, Canada). Th1 and Treg was incubated for 7 days for activation, whereas Th2 was incubated for 14 days. Medium was changed every 2–3 days with the density maintained at 1 × 106 cells/mL. All cultures were maintained in 37 °C incubator, 5% CO2.
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6

Isolation of Human B Cells

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B cells were isolated from whole blood directly using an immunomagnetic negative selection kit (Stemcell Technologies, Canada) according to the manufacturer’s protocol. The isolated B cells were then seeded into a 96-well plate in complete DMEM: DMEM/Ham’s F12 medium.
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7

Monocyte Isolation and IL-1β Assay

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Mouse bone marrow cells were harvested from the femur and tibia with 8 seconds centrifugation at 11,000xg in the presence of sterile ACK lysing buffer (0.15 M NH4Cl, 1 mM KHCO3, and 0.1 mM Na2EDTA). Bone marrow cells were further enriched for monocytes using an immunomagnetic negative selection kit from STEMCELL Technologies (catalog#19861) as per manufacturer’s instructions. 0.2×106 freshly isolated monocytes per well were cultured in 96-well tissue-culture-treated flat-bottom plates (Corning, catalog#353072) with 0.22 μm filtered (Millipore, catalog#S2GPU05RE) complete medium (RPMI with 10% fetal bovine serum and 1% penicillin/streptomycin) in a water-jacket incubator for 1 hour at 37°C with 5% CO2. Non-adhered cells were removed by aspiration and cultured with serum-free medium (RPMI with 1% penicillin/streptomycin) with or without treatments for 16 hours at 37°C with 5% CO2. Conditioned media were harvested for IL-1β release measurements via ELISA (ThermoFisher Scientific, catalog# 88701388). Cells were lysed with RIPA lysis buffer (ThermoFisher Scientific, catalog#89901) with protease and phosphatase inhibitor cocktail (ThermoFisher Scientific, catalog#78430). Total protein concentration was measured with the BCA protein assay (ThermoFisher Scientific, catalog#23227). Measurements were taken from distinct samples.
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8

Isolation and Characterization of Murine Macrophages

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Spleens were isolated from healthy mice or mice after two weeks of EAE induction with or without BBR3378 treatment and homogenized between two frosted glass slides in PBS with 2% fetal bovine serum (FBS). Tissue debris was then sedimented, supernatant containing splenocytes collected, red blood cells removed by using a lysis buffer (Thermo Fisher Scientific, Waltham, MA), and monocytes isolated by using an immunomagnetic negative selection kit (STEMCELL, Vancouver, Canada). Monocytes (2x106 cells per 60 mm dish) were cultured in RPMI 1640 medium (Thermo Fisher Scientific, Waltham, MA) supplemented with 10% FBS, 100 IU/ml penicillin and 100 μg/ml streptomycin at 37° C in a 5% CO2 enriched environment for five days and subjected to analysis of macrophage markers.
To obtain macrophages that exhibit a robust response to lipopolysaccharides (LPS), primary monocytes from healthy animals were collected and cultured as described previously with addition of granulocyte-macrophage colony-stimulating factor (GM-CSF) (PromoCell, Heidelberg, Germany) for seven days to induce macrophage differentiation, and then activation of these MDMs by Escherichia coli 026:B6 LPS (Thermo Fisher Scientific, Waltham, MA) was assessed.
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