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5 protocols using anti cd3 alexa fluor 700

1

Functional T Cell Analysis in Tumor Samples

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Mononuclear cells isolated from fresh tumor specimens were stimulated with 50 ng/ml of phorbol 12-myristate 13-acetate (PMA) + 1 μg/ml of ionomycin for 1 h followed by 3 h incubation with brefeldin A (BioLegend). Unstimulated cells were used as a control. The cells were then washed in PBS, stained with anti-CD3 Alexa Fluor 700 (EXBIO), anti-CD4 ECD (Beckman Coulter) and anti-CD8 HV500 (BD Biosciences), fixed using fixation/permeabilization buffer (eBioscience), permeabilized with permeabilization buffer (eBioscience) and intracellularly stained with an anti-IFN-γ PE-Cy7 (eBioscience), anti-granzyme B Brilliant Violet 421 (BD Biosciences) (Additional file 1: Table S4). The percentage of CD3+CD8+ T cells producing IFN-γ and degranulating upon PMA/ionomycin stimulation were determined by flow cytometry. The data were analyzed with the FlowJo software package (Tree Star, Inc.). Gating strategy is depicted in Additional file 1: Figure S4.
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2

Characterizing Tumor-Infiltrating T Cells

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Mononuclear cells isolated from fresh tumor specimens (study group 2) were incubated with 10 µg/mL anti-PD-1 and 10 µg/mL anti-TIM-3 antibodies for 24 hours at 37°C and 5% CO2. Thereafter, mononuclear cells were stimulated with 50 ng/mL phorbol 12-myristate 13-acetate (PMA)+1 µg/mL ionomycin for 1 hour followed by 3-hour incubation with brefeldin A (BioLegend). Unstimulated cells were used as control. Cells were washed in PBS, stained with anti-CD3 Alexa Fluor 700 (EXBIO), anti-CD4 ECD (Beckman Coulter), and anti-CD8 HV500 (BD Biosciences) monoclonal antibodies, fixed in fixation/permeabilization buffer (eBioscience), further permeabilized with permeabilization buffer (eBioscience) and intracellularly stained with an anti-IFN-γ PE-Cy7 (eBioscience) and anti-GZMB BV421 (BD Bioscience) monoclonal antibody. Flow cytometry was performed on the LSRFortessa analyzer, and data were analyzed with the FlowJo software package (Tree Star) (online supplementary figure 2).
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3

Assessing Immune Checkpoint Inhibitors in AML

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PBMCs from AML patients were incubated with 10 mg/mL anti-PD-1 (nivolumab, Bristol-Myers-Squibb), anti-TIM-3 (BioLegend) or anti-TIGIT (BioLegend) antibodies for 24 hours in 37°C and 5% CO2, followed by incubation with 50 ng/mL PMA and 1 mg/mL ionomycin for 1 hour plus 3-hour incubation with brefeldin A (BioLegend). Unstimulated cells were used as control. Cells were then washed in PBS, stained with anti-CD45-PE (EXBIO), anti-CD3-AlexaFluor700 (EXBIO) and anti-CD56-PerCP-Cy5.5 monoclonal antibodies (BioLegend), fixed in fixation/permeabilization buffer (eBioscience), further permeabilized with permeabilization buffer (eBioscience) and intracellularly stained with anti-IFN-γ-PE-Cy7 antibodies (eBioscience).
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4

Assessing Immune Cell Activation in Tumor Samples

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Mononuclear cells isolated from fresh tumor specimens were stimulated with 50 ng/mL phorbol 12-myristate 13-acetate (PMA) + 1 μg/ml ionomycin in the presence of anti-CD107a FITC monoclonal antibody (BioLegend) for 1 h followed by 3 h incubation with brefeldin A (BioLegend). Unstimulated cells were used as control. Cells were then washed in PBS, stained with anti-CD45 PerCP (EXBIO), anti-CD3 Alexa Fluor 700 (EXBIO) or APC-eFluor780 (eBioscience), anti-CD4 ECD (Beckman Coulter), anti-CD8 HV500 (BD Biosciences) and anti-CD56 Alexa Fluor 700 (BioLegend) monoclonal antibodies, fixed in fixation/permeabilization buffer (eBioscience), permeabilized with permeabilization buffer (eBioscience) and stained with anti-IFN-γ PE-Cy7 (eBioscience), anti-granzyme B Brilliant Violet 421 (BD Biosciences) and anti-perforin APC (BioLegend) monoclonal antibodies. The percentage of CD3+CD8+ T cells and CD3CD56+ NK cells producing IFN-γ and degranulating upon PMA/ionomycin stimulation were determined by flow cytometry. The data were analyzed with the FlowJo software package (Tree Star, Inc.).
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5

Assessing NK Cell Functions in AML

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To assess NK cell functions in AML patients, fresh PBMCs were stimulated with 50 ng/mL phorbol 12-myristate 13-acetate (PMA, from Sigma Aldrich) plus 1 μg/mL ionomycin, or with K562 cells at 10:1 PBMC:tumor cell ratio plus overnight incubation with 200 U/mL IL-2 in the presence of anti-CD107a-FITC monoclonal antibody (BioLegend) for 1 h, followed by 3 h incubation with brefeldin A (BioLegend). Cells were then washed in PBS, stained with anti-CD45-PE (EXBIO), anti-CD3-AlexaFluor700 (EXBIO), anti-CD4-ECD (Beckman Coulter), anti-CD8-HV500 (BD Biosciences) and anti-CD56-PerCP-Cy5.5 (BioLegend) antibodies, fixed in fixation/permeabilization buffer (eBioscience), further permeabilized with permeabilization buffer (eBioscience) and intracellularly stained with anti-IFN-γ-PE-Cy7 (eBioscience) and anti-granzyme B-BrilliantViolet421 (BD Biosciences) antibodies.
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