The largest database of trusted experimental protocols

3 protocols using rabbit anti psd 95

1

Quantitative Analysis of Synaptic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein concentration in the tissues was determined with the Bradford assay kit (Bio-Rad, Hercules, CA, USA). The total and synaptic (Syn) protein extraction (Syn-PER, Thermo Scientific, Waltham, MA, USA) was performed as previously described [19 (link)]. The protein lysates were separated by SDS-PAGE (about 10–12%, sodium dodecyl sulfate, polyacrylamide gel electrophoresis) and transferred to PVDF (polyvinylidene fluoride) membranes. The membranes were blocked in 5% BSA (bovine serum albumin), then incubated with primary antibodies at 4 °C overnight, next incubated off light at RT (room temperature) in secondary antibodies for 1 h (IRD 800 cw, goat-rabbit or goat-mouse 1:10,000; LI-COR). Then, the fluorescence was detected by Odyssey Sa image system (LI-COR) and the densitometric readings were analyzed by Image J software. All antibodies used are as follows: mouse anti-β-actin (1:50,000, Sigma), mouse anti-tubulin (1:50,000, Sigma, Darmstadt, Germany), mouse anti-Reelin (1:500, Milipore, Burlington, MA, USA), rabbit anti-PSD-95 (postsynaptic density protein) (1:2000, Millipore), and rabbit anti-GluN2B, anti-GluN2A, and anti-phosphorylation-GluN2B,(1:1000, Abcam, Cambridge, UK), respectively.
+ Open protocol
+ Expand
2

Immunohistochemical Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Prior to histological staining, 40-mm thick free-floating sections were thoroughly washed with 1X PBS to remove residual sodium azide. In the case of anti-MBP labeling, tissue sections were processed with an additional 1 h incubation with 5% glacial acetic acid in 100-proof ethanol at room temperature (RT). After washing tissue sections were permeabilized with 0.3% TritonX-100 and 2% normal goat serum in 1X PBS for 30 min at RT and blocked with 10% normal goat serum in 1X PBS for 1 hr. Tissues were then incubated with primary antibodies overnight in 4 °C. The following primary antibody (Ab) were used: Rat anti-MBP (Millipore) at 1:1000 dilutions, Rabbit anti-NF200 (Sigma Aldrich) at 1:750 dilutions, Rabbit anti- beta-APP (Life Technologies) at 1:200 dilutions, Mouse anti-NeuN at 1:1000 dilutions (Millipore), Rabbit anti-PSD95, and Rat anti-CD45 at 1:1500 dilutions (Millipore). The next day tissues were washed and incubated with secondary antibodies conjugated to Cy5 or Cy3 (Millipore) for 1 hr at RT. A nuclear stain DAPI (2 ng/mL; Molecular Probes) was added 10 min prior to final washes after secondary Ab incubation. Sections were mounted on slides, allowed to semi-dry, and cover slipped in fluoromount G (Fisher Scientific). IgG-control experiments were performed for all primary Ab, and only non-immunoreactive tissues under these conditions were analyzed (Spence, Wisdom, 2013).
+ Open protocol
+ Expand
3

In vitro Pull-down Assay for Protein Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
For in vitro pull-down assays, glutathione S-transferase (GST; estimated MW; 26 kDa) and the GST fusion proteins GST-GPR85-C including amino acids (SRLPREPYCVI) (estimated MW; 27.5 kDa) and GST-GPR85-deltaC (lacking the PDZ-binding sequence, YCVI) (estimated MW; 27.1 kDa) were purified by Glutathione Sepharose 4B (GE Healthcare Biosciences, Buckinghamshire, UK) from the extract of Escherichia coli containing each plasmid. GST fusion proteins bound to Sepharose beads were incubated with lysates from the brain or COS cells transfected with GFP-PSD-95 and GFP-SAP102 for 2 h at 4°C. The beads were washed three times with lysis buffer and then eluted with 50 mM Tris-HCl (pH 8.0) containing 20 mM reduced glutathione. The bound proteins were then separated by SDS-PAGE and detected by immunoblotting using the following primary antibodies: rabbit anti-SAP102 (Synaptic systems, Goettingen, Germany), rabbit anti-PSD-95 (Millipore), mouse anti-Mupp1 (Becton Dickinson, Franklin Lakes, NJ, USA), mouse anti-Neuroligin (Synaptic Systems), mouse anti-GFP (Roche Diagnostics Schweiz, Rotkreuz, Switzerland), and rabbit anti-GST (Santa Cruz Biotechnology).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!