Stem-loop RT-PCR was used to verify the expression levels of miRNAs between the two strains (Tang et al., 2006 (
link)). Briefly, total RNA from embryos, instar larvae, pupae, male and female adults was extracted by RNAiso Plus reagent, respectively. 2 μg total RNA was reverse-transcribed to cDNA using
AMV transcriptase (TaKaRa, Dalian, China) and looped antisense primer. The mixture was incubated at 42°C for 60 minutes and 85 °C for 5 minutes. qRT-PCR was performed on the ABI Prism 7300 HT Sequence Detection system (Applied Biosystem, CA, USA) using FastStart® SYBR Green (Applied Biosystem, CA, USA). Reactions were incubated in a 96-well optical plate at 50 °C for 2 min, 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s, 60 °C for 1min. A melting curve program was run immediately after the PCR and the data was analyzed by
7300 System SDS Software v1.2.1 (Applied Biosystems).
Table S2 was the primers for the stem-loop quantitative RT-PCR. The raw threshold cycle (Ct) values were normalized against
U6 standard to obtain normalized Ct values, which were used to calculate relative expression levels in samples using the 2
−ΔΔCt method (Livak and Schmittgen, 2001 (
link)).
Hong S., Guo Q., Wang W., Hu S., Fang F., Lv Y., Yu J., Zou F., Lei Z., Ma K., Ma L., Zhou D., Sun Y., Zhang D., Shen B, & Zhu C. (2014). Identification of differentially expressed microRNAs in Culex pipiens and their potential roles in pyrethroid resistance. Insect biochemistry and molecular biology, 55, 39-50.