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7 protocols using anti zeb2

1

Western Blot Analysis of EMT Markers

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Immunoblotting was carried out according to standard procedures.12 (link) The following primary antibodies were used in this study: anti-EGFP (ImmunoKontact, UK; catalogue number 210-PS-1GFP), anti-ZEB1 (Santa Cruz Biotechnology, Dallas, USA; sc-25388); anti-SNAIL2 and anti-Cyclin D1 (Cell Signaling Technology, Danvers, USA; 9585 and 2978) anti-ZEB2 (in-house12 (link)); anti-HA and anti-α-Tubulin antibodies from Sigma-Aldrich (St Louis, MO, USA; H3663 and T5168); anti-TWIST1 antibody from Abcam (Cambridge, MA, USA; AB50887); and anti-E-cadherin (BD Bioscience, San Jose, USA; 610181).
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2

Immunostaining of Stem and Epithelial Markers

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The following primary antibodies were used: anti-K14 (polyclonal
rabbit, 1:1000, Thermo Fisher Scientific), anti-GFP (chicken, 1:1000,
Abcam), anti-SOX2 (rabbit, 1:100, Abcam), anti-Vimentin (Rabbit, 1:200,
Abcam), Anti-ECadherin (rat, clone DECMA-1, 1:1000, eBioscience), anti-p63
(polyclonal rabbit, 1:200, Santa Cruz), Anti-Zeb1 (polyclonal rabbit, 1:300,
Bethyl), Anti-Zeb2 (polyclonal rabbit, 1:200, Sigma), anti-EpCam (rabbit
polyclonal, 1:200, Abcam). The following secondary antibodies were used:
anti-rabbit, anti-rat, anti-chicken, conjugated to AlexaFluor488 (1:400,
Molecular Probes), to rhodamine Red-X or to Cy5 (1:400, Jackson
ImmunoResearch).
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3

Western Blot Analysis of EMT Markers

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Cells were washed twice with phosphate‐buffered saline (PBS) containing CaCl2 and then lysed in a 100 mM NaCl, 1% NP40, 0.1% SDS, 50 mM Tris pH 8.0 RIPA buffer supplemented with a complete protease inhibitor cocktail (Roche, Mannheim, Germany) and phosphatase inhibitors (Sigma‐Aldrich). Protein expression was examined by Western blot using the anti‐ZEB1 (H102, 1/200, Santa Cruz), anti‐ZEB2 (1/500, Sigma), anti‐TWIST1 (Twist2C1a, 1/100, Abcam, Cambridge, MA, USA), anti‐P‐ERK1/2 (#9106, 1/2,000, Cell Signaling Technology, Danvers, MA, USA), anti‐MITF (clone C5, ab80651, 1/500, Abcam), anti‐FRA1 (sc‐605, 1/400, Santa Cruz), anti‐p75 (1/200, Alomone Labs, Jerusalem), anti‐AXL (AF154, 1/1,000, R&D Systems), and anti‐PARP (cleaved form, 29 kDa) (ab6079, 1/200, Abcam) antibodies for primary detection. Loading was controlled using the anti‐β‐actin (clone AC‐15, 1/10,000, Sigma‐Aldrich), anti‐GAPDH (1/20,000, Millipore), or anti‐α‐tubulin (T5168, 1/5,000, Sigma‐Aldrich) antibodies. Horseradish peroxidase‐conjugated rabbit anti‐mouse, goat anti‐rabbit, and donkey anti‐goat polyclonal antibodies (Dako, Glostrup, Denmark) were used as secondary antibodies. Western blot detections were conducted using the Luminol reagent (Santa Cruz). For ZEB1 level analyses in mouse tumors, proteins were extracted from frozen tumors in liquid nitrogen by homogenizing tissue in RIPA buffer.
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4

Immunoblotting Antibody Validation Protocol

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Immunoblotting was carried out according to standard procedures.12 (link) The following primary antibodies were used in this study: anti-EGFP (ImmunoKontact, UK; catalog number 210-PS-1GFP), anti-ZEB1 (Santa Cruz Biotechnology, Dallas, TX, USA; sc-25388); anti-SNAIL2 and anti-Cyclin D1 (Cell Signaling Technology, Danvers, USA; 9585 and 2978) anti-ZEB2 (in-house12 (link)); anti-HA and anti-α-Tubulin antibodies from Sigma-Aldrich (St Louis, MO, USA; H3663 and T5168); anti-TWIST1 antibody from Abcam (Cambridge, MA, USA; AB50887); and anti-E-cadherin (BD Bioscience, San Jose, USA; 610181).
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5

Immunofluorescence Staining of MDA-MB-231 Cells

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MDA-MB-231 cells plated on a coverslip were fixed in 4% paraformaldehyde, followed by a rinse with 1× PBS prior to permeabilization in 1× PBS with 0.3% triton X-100. Cells were incubated in blocking buffer (1× PBS with 0.3% triton X-100 and 5% BSA) and then incubated overnight in primary antibodies (anti-ZEB2, Sigma-Aldrich and anti-Fibrillarin, Abcam) diluted in 1× PBS with 0.3% triton X-100 and 1% BSA at 4 °C. The next day, cells were washed in 1× PBS, then incubated in secondary antibodies (Alexa Fluor 594 goat anti-rabbit and Alexa Fluor 488 goat anti-mouse, Thermo Fisher) diluted in blocking buffer. After washing in 1× PBS, the coverslip was mounted using VECTASHIELD PLUS Antifade Mounting Medium with DAPI (Vector Laboratories). Nikon Eclipse Ti-U microscope was used to visualize the cells.
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6

Comprehensive Protein Expression Analysis

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Protein was isolated by SDS-PAGE gel and transferred to PVDF membrane. After 1 h of blocking in 5% skim milk, the membrane was incubated with various primary antibodies and incubated overnight at 4 °C with Anti-Alix (sc-53540, Santa Cruz), Anti-α-SMA (ab7817, Abcam), Anti-CD63 (ab134045, Abcam), Anti-FAP (ab207178, Abcam), Anti-ICAM1 (ab282575, Abcam), Anti-MMP-9 (ab76003, Abcam), Anti-MMP-3 (ab52915, Abcam), Anti-β-catenin (ab32572, Abcam), Anti-Ki67 (ab15580, Abcam), Anti-PCNA (ab92552, Abcam), Anti-MMP-2 (ab92536, Abcam), Anti-PDGFR beta (ab69506, Abcam), Anti‐β‐actin (A5441, Sigma), Anti-E-cadherin (SAB4503751, Sigma), Anti-N-cadherin (C3865, Sigma), Anti-Vimentin (V6389, Sigma), Anti-snail (SAB1306281, Sigma), Anti-Zeb1 (SAB2500097, Sigma), Anti-Zeb2 (SAB3500515, Sigma), Anti-Slug (PRS3959, Sigma), Anti‐HSP70 (4873, Cell Signaling Technology), Anti‐GM130 (G7295, Sigma), Anti-FUS (DF8391, Affinity), Anti-ACO1 (AF4711, Affinity), Anti-YTHDC1 (77422, Cell Signaling Technology), Anti-TCEAL7 (DF9969, Affinity). And after three times of elution with TBST, the secondary antibody linked with horseradish peroxidase was incubated for 1 h and the electrochemical luminescence was observed by chemiluminescence apparatus. Results quantization was performed by ImageJ software.
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7

Comprehensive Protein Expression Analysis

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Protein was isolated by SDS-PAGE gel and transferred to PVDF membrane. After 1 h of blocking in 5% skim milk, the membrane was incubated with various primary antibodies and incubated overnight at 4℃ with Anti-Alix (1: 1000, Santa Cruz), Anti-α-SMA (1: 1000, Abcam), Anti-CD63 (1:2000, Abcam), Anti-FAP (1: 1000, Abcam), Anti-ICAM1 (1: 1000, Abcam), Anti-MMP9 (1: 1000, Abcam), Anti-PDGFR beta(1: 1000, Abcam), Anti-β-actin(1: 1000, Sigma), Anti-E-cadherin (1: 1000, Sigma), Anti-N-cadherin(1: 1000, Sigma), Anti-Vimentin(1: 1000, Sigma), Anti-snail (1: 1000, Sigma), Anti-Zeb1(1: 1000, Sigma), Anti-Zeb2(1: 1000, Sigma), Anti-Slug(1: 1000, Sigma), Anti-HSP70 (1: 1000,Cell Signaling Technology), Anti-GM130(1: 1000, Sigma), Anti-ZRANB2(1: 1000, A nity), Anti-ACO1(1: 1000, A nity), Anti-MBNL1(1: 1000, A nity), Anti-TCEAL7(1: 1000, A nity). And after three times of elution with TBST the secondary antibody linked with horseradish peroxidase was incubated for 1 hour and the electrochemical luminescence was observed by chemiluminescence apparatus. Results WB quantization was performed by ImageJ software.
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