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13 protocols using gdf15

1

GDF15 and GRASP Administration in CNS

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For central administration
directly into the CNS, GRASP, and GDF15 were infused in 1 μL
volumes into the fourth ventricle (4th ICV). All systemic treatments
were delivered by intraperitoneal (IP) injection. For central administration,
GDF15 (human recombinant, Biovision, cat. 4569) was dissolved at a
concentration of 30 pmol/μL in 100% dimethyl sulfoxide (DMSO).
For systemic treatments, GDF15 was dissolved in a 5 mM acetate salt,
240 mM propylene glycol, and 0.007% polysorbate 20, in a pH 4 saline
solution and injected at a dose of 20 μg/kg (1 mL/kg). For central
administration, GRASP was dissolved in artificial cerebrospinal fluid
(aCSF; Harvard Apparatus) and injected at 300 and 3000 pmol concentrations.
Systemically delivered GRASP was dissolved in 0.9% saline and injected
in a volume of 1 mL/kg at 30 and 100 nmol/kg. Cisplatin (Cis, cis-diammineplatinum dichloride, Sigma-Aldrich) was dissolved
in 0.9% saline and administered at a dose of 6 mg/kg. The selective
5-HT3R antagonist Ondansetron (Tocris) was dissolved in
0.9% saline and IP was injected at 2 mg/kg (1 mL/kg). GDF15, GRASP,
and/or Ondansetron were administered IP at 1 mL/kg, and cisplatin
was administered IP at 6 mL/kg. Fluorescently tagged GDF15 and GRASP
were dissolved in aCSF (300 pmol/μL); 1 μL was infused
into the lateral ventricle (LV ICV).
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2

Immunohistochemical Analysis of GDF15

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Tissue samples were fixed with 10% formalin for 24 h. Then samples were dehydrated, transparent, waxed and embedded. Paraffin‐coated tissue blocks were sliced into 4‐ to 6‐μm sections. Paraffin sections were deparaffinized in xylene twice for 10 min each time and rehydrated with different concentrations EtOH (absolute ethyl alcohol, 95% EtOH, 80% EtOH) for 5 min each time. After deparaffinization and rehydration, the tissue sections were blocked with 3% H2O2 for 10 min. Antigen retrieval was performed with 0.01 m citrate buffer solution (pH 6.0) for 15 min. Then goat serum was added to tissues sections to seal the nonspecific binding site for 15 min. Tissues sections were incubated with the primary antibody against GDF15 (1 : 400; Abcam, Cambridge, MA, USA) at 4 °C overnight and rewarmed at 37 °C for 45 min in the next day. Subsequently, the sections were incubated with horseradish peroxidase‐labeled secondary antibody at room temperature for 20 min. Next, after the addition of diaminobenzidine for color development, the sections were counterstained using hematoxylin. Finally, the images were obtained under a microscope (Olympus, Tokyo, Japan).
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3

Immunostaining for GDF15 and β-catenin

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The IHC and IFC staining were performed as previously described [29 (link), 30 (link)]. The antibodies used for immunostaining were GDF15 (1:100, Abcam, USA) and β-catenin (1:100, Cell Signaling Technology, USA).
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4

Characterizing Cardiac Gene Expression

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qRT–PCR, luciferase reporter assay, and immunohistochemistry were performed as described previously (Pei et al. 2006 (link), 2011 (link), 2015 (link); Wang et al. 2017 (link); Zhao et al. 2018 (link)). We isolated total RNA from mouse tissues or HL-1 cells using RNAzol RT (Molecular Research Center) following the manufacturer's instructions. The antibodies used were PECAM1 (Santa Cruz Biotechnology, sc-46694; and BD Biosciences, 550274), NPR3 (Santa Cruz Biotechnology, sc-515449), TNNI3 (Abcam, ab47003), Ki67 (Vector Laboratories, vp-RM04), and GDF15 (Abcam, ab189358). Sirius Red staining was performed using the Picrosirius Red stain kit (Polysciences). Adenovirus construction and pericardial injection were performed as described previously (Pei et al. 2006 (link), 2011 (link); Wang et al. 2017 (link)).
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5

Protein Isolation and Western Blot Analysis

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Trophoblasts were washed twice with ice-cold PBS and proteins were isolated using 1% Triton X-100 reagent (Sigma-Aldrich; Merck, Germany) on ice. The lysate was centrifuged at 12,000 rpm at 4 °C for 25 min. The supernatant was obtained, and the protein concentration was detected using a BCA kit (Pierce, Rockford, IL, USA). Equal amounts of protein were subjected to 10% SDS polyacrylamide gel electrophoresis, followed by electrotransferring onto PVDF membranes (Pall Corporation, Ann Arbor, MI, USA). Then, 5% fat-free milk powder in TBS with 0.1% Tween-20 (Sigma-Aldrich; Merck, Germany) was used to block the PVDF membranes for 1 h. Antibodies FXR1 (diluted 1:1000; Abcam) and GDF-15 (diluted 1:1000; Abcam) were used to perform western blot analysis using standard techniques. Antibodies against β-tubulin and GAPDH (diluted 1:1000; Yeasen, Shanghai, China) were used as loading controls. ECL imaging system utilized was an Amersham Imager 600.
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6

Protein Expression Analysis in Cell Samples

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Immunoblotting, immunohistochemistry (IHC) and immunofluorescence (IF) studies were carried out as described previously [34 (link)]. The intensity of immunohistochemical reactions was appraised using the semi-quantitative immunoreactive score (IRS) scale of Remmele and Stegner. The information of all antibodies was followed: GDF15 (Abcam; 1:1000 for WB, 1:400 for IHC), E-cadherin (Santa Cruz Biotechnology Inc.; 1:200 for WB, 1:500 for IF), Vimentin (Cell Signaling Technology; 1:1000 for WB, 1:500 for IF), MMP9 (Cell Signaling Technology; 1:1000 for WB), Twist (Santa Cruz Biotechnology Inc., 1:200 for WB), Smad2/3, Smad1, p-Smad2/3, p-Smad1/5/8 (Cell Signaling Technology, 1:1000 for WB) and β-actin (Santa Cruz Biotechnology Inc., 1:5000 for WB). β-actin was used as a loading control for western blots.
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7

Immunohistochemical Analysis of Lung Tissue

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Paraffin sections (4 μm) of lung tissues were deparaffinized, rehydrated, and autoclaved at 121 °C for 10 min in 100 mM citrate buffer (pH 6.0) to retrieve antigens. After treated with 3% hydrogen peroxide for 10 min, the sections were incubated in 10% bovine serum at room temperature for 1 h to block nonspecific interactions. They were incubated with an antibody against collagen-1α (1:250 dilution; Abcam), α-SMA (1:500; Abcam), CST3 (1:1000; R&D Systems), or GDF15 (1:10,000; Abcam) overnight at 4 °C. For immunohistochemistry, the sections were incubated with biotinylated secondary antibodies (1:500) provided by Vector Laboratories (Burlingame, CA). The immune complexes were visualized using the VECTASTAIN ABC Kit (Vector laboratories). For immunofluorescence, the sections were incubated with Alexa Fluor 488-conjugated anti-goat secondary antibody (Thermo Fisher), and counterstained with DAPI (Invitrogen). Fluorescent images were acquired using Olympus fluorescence microscope (DP30BW, Melville, NY) or Nikon confocal laser microscopy (A1, Nikon Instruments, Tokyo, Japan). Four high power fields were randomly selected in each section to analyze stained areas or fluorescent intensities using the ImageJ program (NIH, Bethesda, MD).
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8

Quantitative Immunohistochemical Analysis of GDF15

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Immunohistochemistry was performed as previously described [10 (link)]. Briefly, sections were incubated with the rabbit polyclonal antibody against GDF15 (1:100) (Abcam, UK) overnight at 4°C and visualized using 3,3′-diaminobenzidine (DAB) detection kit (Dako Cytomation, Denmark) containing goat secondary antibody molecules against rabbit immunoglobulin and DAB chromogen. Negative control was performed by using PBS instead of anti-GDF15 antibody. Two pathologists performed blind examination with a microscope. The GDF15 positive proportion score was the percentage ratio of positive GDF15-stained tumor cells to the total number of tumor cells, classified as: 0 (0%), 1 (1–10%), 2 (11–50%), 3 (51–80%), 4 (>80%). The GDF15 intensity score was the staining intensity by visual assessment and was scored as: 0 (negative), 1 (weak), 2 (moderate), and 3 (strong).
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9

Western Blot Analysis of Exosomal Markers and Apoptotic Proteins

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The assays were performed as previously described [6 (link)]. The primary antibodies used were as follows: GDF-15 (Abcam, ab128958), TSG101 (Proteintech, 28283-1-AP), Atrogin1 (Abcam, ab168372), CD9 (ABclonal, A19027), CD63 (ABclonal, A5271), CD81 (ABclonal, A5270), Bax (Proteintech, 50599-2-Ig), Bcl-2 (Proteintech, A11025), MHC (DSHB, MF20), Caspase3 (ABcolonal, A0214), Cleaved caspase3 (Cell Signaling Technology, 9661), Anti-mouse (Multi Sciences, GAM0072) and anti-rabbit (Multi Sciences, GAR0072). ECL Chemiluminescent Kit (Thermo Fisher, 03781) was used to visualize the antibody-antigen interaction and chemical luminescence of membranes was detected by Amersham Imager 600 (GE).
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10

Western Blot and GDF15 ELISA Protocol

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Total cell proteins were extracted using RIPA lysis buffer (Beyotime, Shanghai, China) and separated by 10% SDS/PAGE. The target proteins were transferred onto the poly(vinylidene difluoride) membrane (Bio‐Rad, Hercules, CA, USA). After blocking with 5% nonfat milk, the membranes containing the proteins of interest were incubated with primary antibodies against GDF15 (1 : 1000; Abcam, Cambridge, MA, USA), Vimentin (1 : 2000; Abcam), E‐cadherin (1 : 1000; CST, Littleton, CO, USA), N‐cadherin (1 : 1000; CST), Snail1 (1 : 1000; CST), matrix metalloproteinase 2 (MMP2; 1 : 1000; CST), MMP9 (1 : 1000; CST), phosphorylated (p)‐Smad2 (1 : 2000; Abcam), Smad2 (1 : 200; Sino Biological, Beijing, China), p‐Smad3 (1 : 2000; Abcam), Smad3 (1 : 3000; Abcam) and β‐actin (1 : 5000; Santa, Dallas, TX, USA) at 4 °C overnight. Afterward, the horseradish peroxidase‐conjugated secondary antibodies were added and incubated for 2 h. The proteins were visualized using the enhanced chemiluminescence detection kit (EMD, Billarica, MA, USA). The cell culture supernatant was collected to detect GDF15 protein level using Quantikine ELISA human GDF15 immunoassay kit (Elabscience, Wuhan, China) according to the manufacturer’s manual.
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