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4 protocols using mouse anti ha 11 epitope tag antibody

1

Kinase Activity Assay for CK2α

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The pcDNA3-HA-CSNK2A1 (CK2α)-WT and –K68M were transfected into HEK293T cells by using lipofectamine 2000 (ThermoFisher Scientific). Three days after transfection, cells were lysed with lysis buffer (20 mM Tris-HCl (pH 8.0), 0.5% Nonidet P-40, 250 mM NaCl, 3 mM EDTA, 3 mM EGTA, 2 mM DTT, 0.5 mM phenylmethylsulfonyfluoride (PMSF), 20 mM beta-glycerolphosphate, 1 mM sodium orthovanadate and 1 μg/ml leupeptin. HA-CK2α proteins were immunoprecipitated by using a mouse anti-HA.11 epitope Tag antibody (BioLegend, Cat # 901516) and protein G-agarose beads (Sigma-Aldrich) by rotation at 4°C overnight. The precipitated CK2α proteins were re-suspended in 40 μl of 1x kinase buffer (Cell Signaling, Cat #9802) supplemented with 200 μM ATP (Cell Signaling) and purified His-PRMT6 WT, S11A, T21A or 2A protein, which was expressed in pET-28a vector in E. coli. The kinase reaction was conducted at 30 °C for 30 min, and was stopped by addition of 20 μl 3x SDS sample buffer. Each sample was then boiled for 10 min at 100 °C, followed by IB analysis with indicated antibodies.
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2

CFTR and FLNA Immunolabeling in HBE Cells

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To immunolabel CFTR at the PM, CF HBE cells were transduced with wt-CFTR or F508del-CFTR containing a 3HA-tag in the fourth extracellular loop of CFTR. Confluent cells were gently washed with PBS and incubated with the mouse anti-HA.11 epitope tag antibody (1:400, Biolegend, cat. #901514) at 4°C for 45 min, then rinsed with PBS and fixed in 4% methanol-free formaldehyde (Thermo Fisher Scientific) for 15 min at room temperature. The fixed cells were exposed to goat anti-mouse-IgG conjugated to Alexa Fluor 488 secondary antibody (Invitrogen; 1:1000 dilution) for 1 h, washed with PBS and mounted in ProLong Diamond Antifade Mountant (Invitrogen) for imaging. The antibody was validated in cells that do not express any 3HA-tagged protein. For FLNA immunolabeling, and following FLNA knockdown, HBE cells transduced with wt-CFTR were gently washed with PBS, fixed, permeabilized (0.5% Triton X-100), blocked for 1 h (2% BSA) and incubated with the rabbit anti-FLNA antibody (1:100, Invitrogen, cat. #PA5-86143) for 2 h. Cells were then exposed to goat anti-rabbit IgG conjugated to Alexa Fluor 594 secondary antibody (Invitrogen; 1:1000 dilution) for 1 h and washed and mounted in PBS for imaging. The low fluorescence detected in cells due to the knockdown of FLNA (compared to the scrambled control) validated the antibody.
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3

Protein Analysis by Western Blot

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At 24 hours post-transfection, media was changed to serum free media and samples were collected at 48 hours post-transfection. Cell supernatants were collected and whole-cell lysates were prepared by lysing cells in RIPA buffer. For concentrating supernatants, StrataClean Resin (Agilent, Santa Clara, CA) was used according to manufacturer’s protocol. Samples were diluted and boiled in Laemmli SDS sample buffer for 5 minutes and loaded on 4–15% Mini-PROTEAN TGX Stain-Free Protein Gels (Bio-Rad laboratories, Hercules, CA). After separation via SDS-PAGE, proteins were transferred to methanol activated polyvinylidene difluoride (PVDF) membrane. Mouse anti-HA.11 epitope tag antibody (BioLegend, San Diego, CA) was used as primary antibody and horseradish peroxidase (HRP)-conjugated rat anti-mouse Ig, κ light chain (BD Biosciences, New Jersey) was used as secondary antibody. Membranes were imaged using chemiluminescence detection upon addition of Clarity western ECL substrate (Bio-Rad Laboratories) on the Syngene PXi imager.
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4

HA-tagged Protein Detection Protocol

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At 24 hours post-transfection, media was changed to serum free media and samples were collected at 48 hours post-transfection. Cell supernatants were collected and whole-cell lysates were prepared by lysing cells in RIPA buffer. For concentrating supernatants, StrataClean Resin (Agilent, Santa Clara, CA) was used according to manufacturer's protocol. Samples were diluted and boiled in Laemmli SDS sample buffer for 5 minutes and loaded on 4-15% Mini-PROTEAN TGX Stain-Free Protein Gels (Bio-Rad laboratories, Hercules, CA). After separation via SDS-PAGE, proteins were transferred to methanol activated polyvinylidene difluoride (PVDF) membrane. Mouse anti-HA.11 epitope tag antibody (BioLegend, San Diego, CA) was used as primary antibody and horseradish peroxidase (HRP)-conjugated rat anti-mouse Ig, κ light chain (BD Biosciences, New Jersey) was used as secondary antibody. Membranes were imaged using chemiluminescence detection upon addition of Clarity western ECL substrate (Bio-Rad Laboratories) on the Syngene PXi imager.
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