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8 protocols using nim811

1

NIM811 Administration for mPTP Studies

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For mPTP studies, mice were injected subcutaneously above the dorsal brown fat at a 50 mg/kg final dose of NIM811 (Novartis). The injection was made once a day for 5 days before cold-stress or μPET/CT experiments. The drug was diluted in a solution containing sterile saline, autoclaved Cremophor EL (15%, v/v) (Kolliphor EL, Sigma, C5135) and sterile ethanol (5%, v/v) to facilitate administration of NIM811 and its suspension stability.
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2

Pharmacological Modulation of Stem Cells

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CsA (a gift from Novartis Pharma, Korea), NIM811 (N‐methyl‐4‐isoleucine‐CsA, a gift from Novartis Pharma, Swiss Basel), FK506 (Sigma Aldrich), carbonyl cyanide‐p‐trifluoromethoxy phenylhydrazone (FCCP, Abcam), 6‐Hydroxy‐2,5,7,8‐tetramethylchroman‐2‐carboxylic acid (Trolox, Sigma Aldrich), IWP‐2, IWP‐4 (Stemgent) and SB431542 (Sellekchem) were dissolved in dimethyl sulfoxide (DMSO, Sigma Aldrich). N‐acetyl‐L‐cysteine (NAC, Sigma Aldrich) and tert‐butyl hydroperoxide (tBHP) were dissolved in distilled water. Reagents were treated at the time of medium change. DMSO was treated as a control vehicle.
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3

Neuroprotective Agents in Cell Assays

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NIM811 was a gift from Novartis. CsA, FK506, N-acetyl cysteine (NAC) and Angiotensin II were from Sigma-Aldrich. Mn(III)tetrakis(4-benzoic acid)porphyrin Chloride was from Millipore.
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4

Antibody and Compound Sourcing for HCoV-NL63 Research

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Mouse antibody 1H11 (1:20,000) recognizing HCoV-NL63 N-protein was obtained from INGENASA, Spain (Sastre et al., 2011 (link)). Anti-Lamin A (1:20,000) was purchased from Biomol, Hamburg, Germany. Goat-anti-Lamin B (1:400), rabbit anti-CypA (1:2000) and rabbit anti-CypB (1:1000) were obtained from Santa Cruz Biotechnology, Enzo Life Sciences and Abcam, respectively. Secondary antibodies were received from Dianova (goat anti-rabbit-Ig-horse radish peroxidase HRP, [1:3000] and rabbit-anti-goat-Ig-HRP [1:3000]) and Sigma (anti-mouse-Ig-HRP [1:40,000]).
Compounds 1, 2, 3, 4, and 5 were synthesized as previously described (Malesevic et al., 2013 (link), Prell et al., 2013 (link)). The synthesis of 6 will be described elsewhere. Alisporivir and NIM811 were generously provided by Novartis (Switzerland). CsA, CsD and FK506 were obtained from Sigma-Aldrich, Santa Cruz (Germany) and Enzo Life Sciences (Germany), respectively.
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5

Glioblastoma Cell Lines and Reagents

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GBM cell lines (U251 and T98G) were grown in DMEM, 10% FBS. G22VF cells were generated as previously described,44 and were also grown in the same media as U251 cells. Reagents (cycloheximide, blasticidin, Qvd-oph, chloroquine, tunicamycin and thapsigargin) were purchased from Sigma-Aldrich (St. Louis, MO, USA). U0126 and bafilomycin-A1 were purchased from InvivoGen (San Diego, CA, USA). NIM811 was requested from Novartis (Basel, Switzerland). Rapamycin was from Alfa Aesar (Ward Hill, MA, USA), and torin-2 was obtained from Tocris Bioscience (Bristol, UK).
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6

Antibody Sources and Chemical Reagents for Cell Research

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Mouse antibody against AIF and rabbit antibodies against p53, H2B, and Cyp40, respectively, were purchased from Santa Cruz Biotechnology; mouse antibody against CytC and rabbit antibodies against VDAC and CypA were from Abcam. Monoclonal mouse anti-E1 antibody was from Viral Antigens, and mouse anti-alpha tubulin was obtained from Sigma Aldrich (St. Louis, MO, USA). Secondary antibodies for immunofluorescence and Western blot analysis were from Dianova. The pan caspase inhibitor z-VAD-fmk was from PeptaNova (Sandhausen, Germany); PFTμ and α, staurosporine and camptothecin were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). NIM811 was generously provided by Novartis (Basel, Switzerland). All other reagents were from Sigma Aldrich. Stock solutions were prepared in dimethyl sulfoxide (DMSO), stored at −20 °C and diluted in cell culture medium to their respective final concentrations directly before use. Final concentration of DMSO, which was employed as vehicle (solvent) control, never exceeded 0.1%.
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7

Antibody detection and small molecule inhibitors for COVID-19 research

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Mouse antibody 1H11 (1:20,000) recognizing HCoV-229E N-protein was obtained from INGENASA, Spain (Sastre et al., 2011 (link)). Anti-Lamin A (A303-433A, [1:20,000]), anti-PPIA (ab3563, [1:500]) and anti-PPIB (PA1-027A, [1:800]) were purchased from Biomol, Abcam and ThermoFisher, respectively. Secondary antibodies were received from Biomol (goat anti-rabbit-Ig-horse radish peroxidase HRP, [1:3000] and rabbit-anti-goat-Ig-HRP [1:3000]) and Sigma Aldrich (anti-mouse-Ig-HRP [1:40,000]).
Alisporivir (formerly DEB025) and NIM811 were provided by Novartis (Basel, Switzerland). CsA and Rapamycin (RAPA) were obtained from Sigma-Aldrich (Germany). Cyclosporin H (CsH) was synthesized according to published procedures (Whitaker and Caspe, 2011 ). Synthesis of compound 3 was described recently (Carbajo-Lozoya et al., 2014 (link); Malešević et al., 2013 (link)).
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8

Antiviral Compounds Sourcing Protocol

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The HCV NS5A inhibitor daclatasvir (Bristol Myers Squibb), the HCV NS5B polymerase inhibitor sofosbuvir (Gilead), the HCV NS3 protease inhibitors boceprevir (Merck) and telaprevir (Vertex) and the HIV-1 reverse transcriptase inhibitor emtricitabine (Gilead) were all obtained from MedChemexpress (Princeton, NJ 08540, USA). Alisporivir and NIM811 were generously provided by Novartis, whereas cyclosporine A, sanglifehrins A and B were generously provided by Drs. Wilkinson and Gregory. Poly I:C was obtained from InvivoGen (San Diego, CA, USA).
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