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External standard

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External standards are reference materials used to calibrate and validate analytical instruments. They provide a known concentration or value to ensure the accuracy and precision of measurement results.

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15 protocols using external standard

1

Pesticide Residue Analysis by GC

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The organochlorine pesticides were determined by extracting each sample in Soxhlet apparatus and the extract were run under gas chromatograph (GC) instrument. Identification and quantification were accomplished using known amount of external standard procured from Sigma-Aldrich. However, the determination of organophosphorus pesticides was performed by GC-mass spectrometry.
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2

HPLC-RI Analysis of Milk Metabolites

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The supernatants from fresh and stored milk, and from randomly selected MPN milk samples were subjected to high performance liquid chromatography (Merck-Hitachi, Switzerland) with refractive index detection (HPLC-RI) using an Aminex HPX-87H column (300 × 7.8 mm; BioRad, Switzerland). Thawed supernatants (40 μl) were, without additional extraction procedure, eluted at 40°C with 10 mM H2SO4 at a flow rate of 0.6 ml per minute. Lactose, SCFA and lactate were quantified using external standard (all from Sigma-Aldrich). Detection limits were 1 mM for lactose, 0.9 mM for lactate, and 0.5 mM for formate, succinate, acetate, propionate and butyrate. A representative chromatogram is shown in Supplementary Figure S1.
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3

Quantifying 5-HT via HPLC-EC

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The 5-HT concentration was measured in dialysates by high-performance liquid chromatography with electrochemical detection. The system consisted of an ESA 5600A Coularray detector with an ESA 5014B analytical cell and an ESA 5020 guard cell. The column was an ESA HR-80X3.2 maintained at 38 °C, and the mobile phase was the ESA buffer MD-TM. The analytical cell potentials were kept at −100 mV and +200 mV and the guard cell at +220 mV. Dialysate (25 μL) was injected with an ESA 542 auto-sampler that kept the dialysates at 6 °C. External standards (Sigma) were run each day to quantify 5-HT.
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4

Quantification of 5-HT Levels by HPLC

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5-HT concentrations were determined, as previously described (Amat et al., 1998 (link)), by HPLC with electrochemical detection. The system consisted of an ESA 5600A Coularray detector with an ESA 5014B analytical cell and an ESA 5020 guard cell. The column used was an ESA MD-150 (C-18; 3 μm; 150 × 3.2 mm), which was maintained at 40°C, and the mobile phase was the ESA buffer MD-TM. The analytical cell potentials were kept at −100 and +200 mV, and the guard cell was kept at +220 mV. Dialysate (25 μl) was injected with an ESA 542 Autosampler that kept the dialysates at 6°C. The 5-HT detection limit was 30 fg. External standards (Sigma-Aldrich) were run each day to quantify 5-HT by means of peak height and using ESA software.
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5

Quantifying Serotonin Levels via HPLC

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5-HT concentration was measured in dialysates using high-performance liquid chromatography (HPLC) with electrochemical detection. The system consisted of an online Shimadzu DGU-2045 degasser, an ESA 584 pump, a Dionex UltiMate 3000 electrochemical detector with a 6041 RS ultra amperometric cell and autosampler, and an ESA 5020 guard cell. The analytical column was an Acclaim RSLC PolarAdvantage II (2.1 × 100 mm; Thermo Fisher Scientific), maintained at 38 °C, and the mobile phase was the ESA buffer MD-TM. The analytical cell potential was kept at +220 mV, and the guard cell at +250 mV. External standards (Sigma-Aldrich) dissolved in artificial cerebrospinal fluid were run each day to quantify 5-HT.
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6

Carotenoid Extraction and Analysis

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Individual carotenoids were extracted by using 5 mg of two-mode dry biomass for conventional extraction (benchmark extraction) or 50 mg from supercritical fluids (SF) extracts. Saponification of samples was then performed, and a tricomponent solution was added in all the samples as described by Cerón-García et al. [67 (link)]. This tricomponent solution was composed of ethanol:hexane:water in a proportion of 77:17:6 v/v/v and contained 0–60% w/w potassium hydroxide [68 ]. The supernatant was transferred into an amber vial for chromatographic analysis. Subsequently, individual carotenoids were separated and identified by using the HPLC system (Jasco Inc, Tokyo, Japan). It was equipped with a quaternary pump (PU-2089 s Plus), diode array detector, and RP-18 column (Lichrosphere, 5 µm × 150 mm) by using a method described by Cerón-García et al. [67 (link)]. In the mobile phase, solvent A was water/methanol (2:8, v/v), solvent B was acetone/methanol (1:1, v/v), and the detection wavelength was 450 nm at 25 °C of column temperature. External standards (Sigma-Aldrich) and their corresponding calibration curves were used to identify and quantify individual carotenoids such as lutein, zeaxanthin, violaxanthin, astaxanthin, and β-carotene. It was performed in triplicate (n = 3).
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7

HPLC Analysis of Microbial Metabolites

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The culture supernatants were thawed on ice, diluted, and passed through 0.45 μm membrane syringe filters (Millipore; Merck-Millipore, Burlington, MA, USA). A high-performance liquid chromatograph, Agilent Technologies 1200 series (Agilent Technologies, Santa Clara, CA, USA), was used to determine the concentration of glycerol (GLY; [g L−1]) and metabolites (erythritol, ERY; mannitol, MAN; citric acid, CA; α-ketoglutaric acid, α-KG [g L−1]) contained in the culture liquid. The apparatus was equipped with a refractive-index detector (G1362A) and a Rezex ROA-Organic Acid H+ column (Phenomenex, Torrance, CA, USA). Operating conditions were as follows: 0.005 N H2SO4 as eluent at a flow rate of 0.6 [mL min−1]; the column temperature was set at 40 °C. External standards (purchased from Sigma-Aldrich) were used for identification and quantification of the peaks areas in chromatograms, which were analyzed using ChemStation for LC 3D software (Agilent).
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8

Serum Amino Acid Quantification

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Quantification of serum amino acids was carried out with an amino acid analyser A300 (MembraPure, GmbH, Germany) as described previously (Lei et al., 2013). In brief, the serum samples (750 μL) were precipitated by adding 250 μL of 15% (v/v) sulphosalicylic acid solution. Then, the mixtures were incubated for 1 hr at 4°C and centrifuged (15,000 g, 15 min, 4°C). Prior to analysis, the supernatant was filtered through a 0.22 μm cellulose membrane (Ameritech Scientific Corp, Irvine, CA, USA). Diluents comprised acetic acid, formic acid, trifluoroacetic acid, lithium acetate and ethanol to final amino nitrogen of 0.008%–0.01% were used to dilute the supernatant. Liquid chromatograph with an ion‐exchange column (TS263, MembraPure, GmbH, Germany) was used to detect ninhydrin reaction and measure absorbance at 570 and 440 nm for Pro. The concentration of each amino acid was calculated using external standards (Sigma–Aldrich, St. Louis, MO, USA) and expressed in μg/mL.
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9

Mannitol Metabolism in FLAB Strains

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FLAB strains were sub-cultured in modified FYP broth containing fructose (0.5% w v−1) and mannitol (1% w v−1) as carbon sources. Sub-cultured cells were harvested, washed as described above, and inoculated on Mannitol Yeast extract Peptone (MYP) agar (identical to FYP medium but fructose was replaced by mannitol) supplemented with 0.5% CaCO3 (w v−1). Plates were incubated at 30 °C for 48 h. Mannitol consumption was evaluated by measuring the size of the clearance zone surrounding the colonies, which indirectly indicates the hydrolysis of CaCO3 reacting with organic acids synthesized by bacteria.
Mannitol consumption and deriving metabolites were also investigated during FLAB growth in MYP broth. Cells were cultivated in FYP broth until the late exponential growth phase was reached (ca. 18 h), harvested as described above, and re-suspended at the initial cell density of ca. 7 Log CFU mL−1 into a MYP broth. Cells were cultured at 30 °C for 72 h under aerobic condition in shaking (200 rpm) flasks with baffles. Organic acids and mannitol concentrations were determined by HPLC as described above, using external standards (Sigma-Aldrich). The pH was measured by a Crison pH-meter (Model 507, Crison, Milan, Italy).
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10

Amino Acid Composition Analysis by HPLC

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The amino acid composition of F1, F2, F3 and soup was determined according to the method described by Yang et al. [21] (link)with a slight modification. It was determined by applying high performance liquid chromatography (HPLC, Waters, Milford, MA) coupled with cation exchange column (Na + ,4.6 mm ID×60 mm).The total amino acid compositions were determined after oven drying at 60 ºC for deacidify prior to hydrolysis at 110 ºC for 24 h with 6 M hydrochloric acid. External standards (Sigma, St. Louis, MO, USA) of 17 amino acids and non-protein amino i.e. taurine and ornithine were used for quantification.
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