The largest database of trusted experimental protocols

4 protocols using birb796

1

Isolation and Culture of Primordial Germ Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gonads were dissected in Hepes-Dulbecco Modified Eagle Medium (DMEM; Invitrogen, Carlsbad, CA) supplemented with 15% fetal bovine serum (FBS; Hyclone Laboratories, Logan, UT). PGCs were cultured in high-glucose DMEM supplemented with 0.1 mM nonessential amino acids, 0.1 mM 2-merkaptoethanol, 100 IU/ml penicillin, 100 μg/ml streptomycin, 2 mM glutamine, 1 mM sodium pyruvate, and 15% FBS. Isolated PGCs were treated with 0.2–100 ng/ml FGF9 (Sigma-Aldrich, St. Louis, MO). In some experiments, PGCs were cultured with p38 inhibitors (BIRB796; Cayman Chemical Company, Ann Arbor, MI, SB202190; Sigma-Aldrich) at 10 μM or MEK inhibitor (U0126; Cayman Chemical Company) at 1 or 10 μM.
+ Open protocol
+ Expand
2

Microglial responses to Borrelia burgdorferi

Check if the same lab product or an alternative is used in the 5 most similar protocols
Assays were carried out with approximately 1 to 2 × 104 cells/well of microglia seeded in 24-well tissue culture plates. At the time of the assay, the culture medium was removed and replaced with fresh medium without antibiotics, and the cells were pretreated with the pertinent inhibitors for 2 h prior to adding B. burgdorferi (MOI of 10:1). The microglial cells were incubated with the bacteria and inhibitors for a further 24 h, followed by collection of supernatant after centrifuging at 2,095 × g for 10 min at 4°C. Supernatants were stored at −20°C until analysis. The following inhibitors were used: SB203580 and BIRB796 (p38); U0126 (MEK1/2); SP600125 and Jun N-terminal kinase (JNK) inhibitor VIII (JNK) (all but one were from EMD Millipore, Billerica, MA; BIRB796 was obtained from Cayman Chemical Co., Ann Arbor, MI); and oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphorylcholine (OxPAPC) (TLR2/4), CLI-095 (TLR4), Gefitinib (RipK2), and myeloid differentiation primary response 88 (MyD88) inhibitory peptide (InvivoGen, San Diego, CA).
Pam3CSK4 (Imgenex, San Diego, CA), LPS O55:B5 (Sigma-Aldrich, St. Louis, MO), or muramyl dipeptide (MDP, InvivoGen) were included as positive control agonists when required.
+ Open protocol
+ Expand
3

Inhibitor Screening in Cellular Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Inhibitors were used where specified at the designated concentrations, including MK-866 (Cayman Chemicals catalog # 21753), BIRB-796 (Cayman Chemicals catalog # 10460), NVP-BKM120 (Cayman Chemicals catalog # 11587), and SB203580 (Cayman Chemicals catalog # 13067).
+ Open protocol
+ Expand
4

Compound Preparation for Cell Culture

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vacuolin-1 (#20425), YM201636 (#13576), Apilimod (#19094), SB202190 (#10010399), BIRB-796 (#10460), Skepinone-L (#16974), LY2228820 (#23259), Tak-715 (#26170) from Cayman Chemical, and WX8 and NDF from SPECS were dissolved in DMSO (Sigma Cat# D2650) at 20 mM stock concentration and diluted as necessary to be added to cell culture medium at 1:1,000 dilution. An equal volume of DMSO (vehicle) was added to control cells.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!