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4 protocols using dylight 488 or 594 conjugated secondary antibody

1

Immunofluorescence Staining of Muscle Stem Cells

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Immunofluorescence staining was performed as previously described (Dridi et al., 2012 (link); Greene et al., 2020b (link)). Briefly, SC were grown in chamber slides and fixed with methanol for 10 min at −20°C, then permeabilized with Triton-X 100. Cells were incubated with serum-free protein block (Dako, Carpinteria, CA) for 1 hour at room temperature, then incubated with anti-HIF1α, anti-PAX7, anti-Myf5, anti-ACLY, anti-FASN, anti-ME, anti-SREBP1 or anti-SREBP2 (1:200, in Antibody Diluent, Dako, Carpinteria, CA, overnight at 4°C) for mono-staining or a combination of anti-PAX7 with anti-Myf5 for double-labeling immunofluorescence. Signal was visualized with DyLight 488- or 594-conjugated secondary antibody (Thermo Fisher Scientific, Grand Island, NY). Slides were cover slipped with Vectashield with 4′,6-diamidino-2-phenylindole (DAPI, Vector Laboratories, Burlingame, CA), and images were obtained and analyzed using Zeiss Imager M2 and AxioVision software (Carl Zeiss Microscopy, Pleasanton, CA).
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2

Immunofluorescence Staining of GLUT and HSP Proteins

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Immunofluorescence staining was performed as previously described (Dridi et al., 2012 (link); Greene et al., 2020 (link)). Briefly, IPEC-J2 cells were grown in chamber slides, exposed to 37 or 54°C as described above and fixed with methanol for 10 min at −20°C before being permeabilized with Triton-X 100. Cells were blocked with serum-free protein block (Dako, Carpinteria, CA, USA) for 1 h at room temperature, then incubated with anti-GLUT1, anti-GLUT2, anti-GLUT3, anti-HSP60 (Santa Cruz Biotechnology, Dallas, TX, USA), or anti-HSP70 (Pierce Thermo Scientific, Rockford, IL, USA). All antibodies were diluted at 1:200, in antibody diluent (Dako, Carpinteria, CA, USA) and incubated overnight at 4°C. Signal was visualized with DyLight 488- or 594-conjugated secondary antibody (Thermo Fisher Scientific, Grand Island, NY, USA). Slides were coverslipped with vectashield with diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA), and images were obtained and analyzed using Zeiss Imager M2 and AxioVision software (Carl Zeiss Microscopy).
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Immunofluorescence and Live Cell Imaging of GLUT3 Dynamics

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Cells were fixed in 4% paraformaldehyde at room temperature for 20 min and permeabilized with 0.5% Triton X-100 for 10 min. Subsequently, cells were rinsed three times with PBS, and blocked in blocking buffer (0.1% BSA in PBS) for 30 min. Cells were incubated overnight with the specific primary antibodies at 4 °C, and washed three times with PBS. After being incubated with DyLight 488- or 594-conjugated secondary antibodies (Thermo Scientific), cells were mounted with Fluoroshield Mounting Medium with DAPI (Abcam). Fluorescent images were visualized using a Leica DMi 8 fluorescence microscope (Leica, Wetzlar, Germany). For live cell imaging, cells were grown on glass bottom dishes and treated with CLIP3 siRNA or IR. Intracellular GFP-tagged GLUT3 dynamics in live cells were imaged in an environmentally controlled chamber at 37 °C for the indicated times using LSM 800 confocal microscope (ZEISS, Oberkochen, Germany). The images were analyzed with ZEN software (ZEISS). For analysis of all microscopy images, raw image data were used.
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Chondrocyte Immunofluorescence Staining

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Primary chondrocytes were plated on gelatin coated Nunc Lab-Tek II chamber slides (Thermo Fisher Scientific, Waltham, MA) until predetermined time-points in culture. Immunofluorescence staining was performed as previously described (Dridi et al., 2012). The signal was visualized using either DyLight 488- or 594-conjugated secondary antibodies (Thermo Fisher Scientific, Waltham, MA). Vectashield with DAPI (Vector Laboratories, Burlingame, CA) was used as mounting media before slides were cover slipped. Images were obtained using Zeiss Imager M2 and AxioVision software version LE2019 (Carl Zeiss Microscopy, Oberkochen, Germany).
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