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Sigenome non targeting control

Manufactured by Horizon Discovery

The SiGenome non-targeting control is a synthetic RNA molecule designed to serve as a negative control in RNA interference (RNAi) experiments. It is used to assess off-target effects and validate the specificity of gene silencing without directly targeting any known gene.

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4 protocols using sigenome non targeting control

1

Targeting Transcription Factors in Melanoma

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A375 crSOX10 knockout cells were transfected with either siGenome non-targeting control (Dharmacon, Lafayette, CO, #CTM-602672/APLAB-000061), siRNA targeting JUND (Dharmacon, Lafayette, CO, #D-003900-09, #D-003900-08) or siRNA targeting FOSL2 (Dharmacon, Lafayette, CO, #D-004110-01) at a final concentration of 25 nM using Lipofectamine RNAiMAX (Invitrogen, San Diego, CA, #56532). Sequences are as follows: JUND#9, GAAACACCCUUCUACGGCG; JUND#8, CGCUCAAGGACGAGCCACA; FOSL2#1, GGCCCAGUGUGCAAGAUUA; Non-targeting siGenome control, UAGCGACUAAACACAUCAAUU. MeWo and A375 parental and crSOX10 knockout cells were transfected with either on-target control siRNA (Dharmacon, Lafayette, CO, #D-001810-01) or siRNA targeting cIAP1 (Dharmacon, Lafayette, CO, #J-004390-12), and MeWo MTC, A375 CRT34 cells, and A375 CRT35 cells were transfected with either siGenome non-targeting control (Dharmacon, Lafayette, CO, #CTM-602672/APLAB-000061), siRNA targeting NFκB p50 (Dharmacon, Lafayette, CO, #D-003520-01), or siRNA targeting NFκB p65 (Cell Signaling, Danvers, MA, #6261) at a final concentration of 25 nM using Lipofectamine RNAiMAX (Invitrogen, San Diego, CA). Sequences are as follows: cIAP1, UCGCAAUGAUGAUGUCAAA; NFκB p50, GCAGGUAUUUGACAUAUUA; NFκB p65, the sequence is not publicly available; On-target control, UGGUUUACAUGUCGACUAAUU; Non-targeting siGenome control, UAGCGACUAAACACAUCAAUU.
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2

ZUFSP Knockdown and CRISPR-Cas9 Targeting

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The following siRNAs were used in this study:

siCTRL: siGENOME Non-targeting control (Dharmacon)

siZUFSP (#1): AUAUGGAACUUCAGAUAAC

siZUFSP (#2): UUACCAUAUUCUUCAGGAA

siZUFSP (#3): GGUCACAGUCGAACUGUUA

siZUFSP (#4): CAGUCGAACUGUUAUUGGA (Ambion, s48009)

siZUFSP (#5): GGAAGACUGUGAUCAACCA (Ambion, s48010)

siZUFSP (#6): GGAACUUCAGAUAACAAGA (Ambion, s48011)

siZUFSP (#7): GCAGAGACAAUAUGGUUUA; GAUUGGAGCAUGUGAAGUA; CUUCAUAGGUAUUAUCAGA; UACACACCCUCGCUUAUUU (Dharmacon, siGENOME Smartpool)

siCtIP: GCUAAAACAGGAACGAAUC

The pSpCas9n(BB)-2A-Puro (PX459) V2.0 vector was a kind gift from Dr Feng Zhang (Addgene plasmid #62988) (Ran et al., 2013 (link)). The following sgRNA sequence was used in this study: UBC13-sgRNA: 5′- GGAGGATGGATGGTACCCCCTGG - 3′ (exon 1).
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3

siRNA-mediated gene knockdown using Lipofectamine

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Gene knockdown experiments by siRNA were carried out using Lipofectamine RNAiMAX transfection reagent (Invitrogen). siGENOME non-targeting control, SLFN5, and SLFN11 SMARTpool siRNAs were purchased from Dharmacon. Cells in 12-well plates were transfected with 20 pmol/ml of siRNA and 2 μl of RNAiMAX.
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4

siRNA-mediated gene knockdown using Lipofectamine

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Gene knockdown experiments by siRNA were carried out using Lipofectamine RNAiMAX transfection reagent (Invitrogen). siGENOME non-targeting control, SLFN5, and SLFN11 SMARTpool siRNAs were purchased from Dharmacon. Cells in 12-well plates were transfected with 20 pmol/ml of siRNA and 2 μl of RNAiMAX.
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