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3 protocols using gapdh

1

Real-time PCR Analysis of Inflammatory Markers

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Total RNA was extracted using an RNAEasy kit according to the manufacturer’s instructions (Bioecon Biotec Co., Shanghai, People’s Republic of China). RNA purity was checked by measuring the OD260/280 of RNA samples. cDNA was synthesized through reverse transcription using M-MLV reverse transcriptase and oligo(dT) primer. The gene expression levels of SIRT1, TNF-α, IL-6, IL-1β, and iNOS were detected by real-time PCR. PCR amplification was performed in a 96-well plate in triplicate. Each reaction well consisted of 10 µL of 2× SYBR Green PCR Master mix, 0.5 µL forward and reverse primers, and 1 µL of template cDNA to obtain a final volume of 20 µL. The PCR analysis was performed using a Mastercycler ep realplex apparatus (Eppendorf, Germany). After an initial denaturation step for 3 minutes at 95°C, the conditions for cycling were 39 cycles of 30 seconds at 95°C, 30 seconds at 60°C, and 15 seconds at 72°C. The primer sets for SIRT1, TNF-α, IL-6, IL-1β, iNOS, and GAPDH were purchased from Dingguo Changsheng Biotechnology Co. (Beijing, People’s Republic of China) and are listed in Table 1.
The relative expression level of each target gene was normalized against the GAPDH control using the 2−ΔΔCt method and further compared with its own control. All samples were studied in independent triplicate experiments.
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2

Protein Expression Analysis by Western Blot

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Protein preparation and western blot analysis were performed as described previously (Hu et al., 2007 (link)). Briefly, samples were separated by SDS-PAGE and transferred to PVDF membranes (Bio-Rad, Hercules, CA, United States). The blots were blocked with non-fat dry milk (7.5%) in Tris-buffered saline/Tween 20 (TBST) for 2 h and then incubated with primary antibodies at 4°C overnight. Antibodies against p-CREB Ser133 (#9198), CREB (#9197), ERK1/2 (#4695), p-ERK1/2 Thr202/Tyr204 (#4370), p-STAT3 Tyr705 (#9145), STAT3 (#4904), and GAPDH (#5174) were purchased from Cell Signaling Technology (Danvers, MA, United States) and diluted at 1:1000 for use. The horseradish peroxidase-conjugated secondary antibodies (Dingguo, Beijing, China) were used at 1:20,000 dilutions for GAPDH and 1:5000 otherwise. Immunoreactive proteins were detected by ECL plus Western blotting detection reagent (GE Healthcare, Buckinghamshire, United Kingdom) and quantified by densitometry (Bio-Rad).
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3

Comprehensive Protein Extraction and Analysis

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Total protein extraction from incorporated cells was conducted using RIPA lysis buffer (WB-0071, Dingguo Changsheng Biotech, Beijing), and protein quantification utilized the BCA protein quantitative kit (BCA01, Dingguo Changsheng Biotech, Beijing). Subsequently, we loaded (20 μg) on 10% SDS-PAGE gel for protein separation, before transfer to PVDF membranes, which were then treated with specific primary antibodies as follows: GALNT2 (Abcam, Shanghai, Ab140637, 1:2000), LATS1 (Abcam, Shanghai, Ab243656, 1:1000), LATS2 (Abcam, Shanghai, Ab243657, 1:1000), p-LATS2 (Proteintech, 28998-1-AP, 1:2000), YAP (Abcam, Shanghai, Ab205270, 1:1000), p-YAP (Abcam, Shanghai, Ab76252, 1:5000), TAZ (Abcam, Shanghai, Ab242313, 1:1000), p-TAZ (Abcam, Shanghai, Ab277791, 1:1000), β-actin (Proteintech, 81115-1-RR, 1:2000), and GAPDH (PROTEINTECH; 60004-1, 1:5000). Protein visualization utilized the ECL reagent (ECL-0111, Dingguo Changsheng Biotech, Beijing) and protein quantification was performed using Image J, with GAPDH or β-actin as the control.
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