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48 protocols using stemmacs ips brew xf

1

Genetically Modified hiPSC Generation

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hiPSC were seeded onto a 6 well plate at a density of 2 × 105 cells. gDNA (1.25 µg) was incubated with Lipofectamine Stem Transfection Reagent (8 μl) (Thermo Fisher) and Opti-MEM™ (250 μl) (Thermo Fisher) according to the manufacturer’s protocol. The solution was then added to the hiPSCs in StemMACS™ iPS-Brew XF (2 ml) (Miltenyi Biotec) dropwise. The live cells were harvested 1–3 days later and GFP + single cells via flow cytometry onto Matrigel coated plates containing StemMACS™ iPS-Brew XF (Miltenyi Biotec) and ROCK inhibitor Y-27632 (Stem Cell Technologies). Individual cells grew into colonies before being picked and passaged into an individual well per colony. The clones are validated via sequencing of the genomic DNA of the colony.
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2

Expanding hiPSCs for Organ-on-a-Chip

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All differentiated tissues used for the organ chip coculture were derived from the same hiPSC line HUMIMIC101 (TissUse GmbH, Berlin, Germany). HUMIMIC101 cells were generated by TissUse GmbH with donor consent for commercial use to study the influence of age and gender on the reprogramming into iPSCs and differentiation into specific cell types [13 (link)]. The cells were maintained on growth factor reduced (GFR) Matrigel coated 6-well plates (Corning, Corning, NY, USA) in StemMACS iPS-Brew XF (Miltenyi Biotec, Bergisch Gladbach, Germany). During the normal maintenance culture, the cells were seeded at densities in the range of 2000–4000 cells/cm² in StemMACS iPS-Brew XF with the addition of 10 µM of ROCK-inhibitor Y-27632 (Cayman Chemicals, Ann Arbor, MI, USA). After 48 h, the medium was removed and replaced by fresh medium without the ROCK-inhibitor. From there on, the media were exchanged every day until the passaging of the cells seven days after seeding when the confluence reached approximately 90%. For passaging, hiPSCs were washed once with PBS without calcium and magnesium and incubated with a sufficient volume of Accutase (Corning, Corning, NY, USA) for five to seven minutes.
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3

Maintaining Human Pluripotent Stem Cells

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HESC lines HES3 and HUES8 and the hiPSC line hCBiPSC251 (link) were cultivated as described earlier4 (link),27 ,30 (link). Briefly, all hPSCs were cultured as colonies on cell culture plastic coated with hESC-qualified Matrigel (Corning, Amsterdam, Netherlands). As cultivation medium mTeSR1 (Stem Cell Technologies, Cologne, Germany) or StemMACS™ iPS-Brew XF (Miltenyi Biotec, Bergisch Gladbach, Germany) was used. Passaging was performed every 5–7 days using a non-enzymatic solution52 (link) or Dispase (5 U/mL) in a ratio of 1:6 up to 1:40 onto Matrigel-coated 6-well plates.
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4

Cultivation of Human Pluripotent Stem Cells

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hFF-iPSCs were maintained on gamma-irradiated CF1-MEFs in DMEM/F12 (Gibco) supplemented with 20% KnockOut-Serum Replacement (Gibco), 0.1 mM 2-mercaptoethanol, 1% Pen/Strep (Lonza), 1% non-essential amino acid solution, 2 mM L-glutamine, 8 ng/mL human FGF-2 (Miltenyi Biotec) or on Matrigel (BD Bioscience) in StemMACS iPS-Brew XF (Miltenyi Biotec). hESCs (SA001 and H9) were cultivated on feeders as described above but in KO-DMEM and DMEM/F12 (Gibco), respectively.
Cells were passaged with TrypLE or EDTA (Thermo Fisher Scientific) every 4–7 days. Cells were replated at a density of 8,000–12,500 cells/cm2 in medium supplemented with ROCK inhibitor (Thiazovivin 2 μM; Miltenyi Biotec) for the first 48 hr. Afterward, media change was conducted daily.
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5

Maintaining Human iPSCs/ESCs in Culture

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Human iPSC/ESCs (Table S1) were maintained on dishes coated with Matrigel in mTeSR1 or StemMACS iPS-Brew XF (Miltenyi Biotec) media with 1% penicillin/streptomycin. iPSCs were passaged weekly with ReLeSR (STEMCELL Technologies) with daily media changes except for the day following passaging. Accutase (Innovative Cell Technologies) and media with 10 μM Rho-associated kinase (ROCK) inhibitor (Y-27632, STEMCELL Technologies) was used for any single-cell dissociation. Routine mycoplasma testing was performed.
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6

Maintenance of hESCs and iPSCs

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Approval for the use of hESCs used in this study was granted by the MRC Steering Committee for the UK Stem Cell Bank and for the Use of Stem Cell Lines (ref, SCSC13‐19). RC17 hESCs (~passages 25‐30) and AST18 iPSCs were maintained in self‐renewing conditions on Laminin‐521 (L521, 5 μg/ml, Biolamina) coated 6‐well plates (Corning), and fed daily with StemMACS iPS‐Brew XF (iPS‐B, Miltenyi Biotec). Every 2 or 3 days, once the hESCs reached 70%–90% confluency, the cells were passaged as clumps with EDTA (0.5 mM, Thermo Fisher Scientific) at a split ratio of 1:3 to 1:8. See Supporting Information Table S1 for all catalogue numbers.
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7

Inducible Neurogenesis from Human iPSCs

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The human iPSC cell line WTC11 carrying a doxycycline-inducible Ngn2 transgene (Miyaoka et al. 2014 (link); Wang et al. 2017 (link)) were cultivated as previously described (Bell et al. 2021 (link); Buchholz et al. 2022 ). Briefly, iPSCs were cultured on GelTrex™-coated plates (1X, ThermoFisher Scientific) in StemMACS™ iPS-Brew XF (Miltenyi). When reaching confluence, the cultures were passaged with Versene™ passaging solution (ThermoFisher Scientific) and seeded in thiazovivine-supplemented (Axon Medchem) iPS-Brew for 1 day. Cells were grown at 37 °C and 5% CO2 in a humidified incubator.
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8

Generating iPSC-derived Mesenchymal Stromal Cells

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Mesenchymal stromal cells were isolated from bone marrow (caput femoris) of patients undergoing orthopedic surgery and culture-expanded in standard medium consisting of Dulbecco’s Modified Eagle Medium (DMEM; 1 g/l glucose; PAA, Pasching, Austria), 1% L-glutamine (PAA), 1% penicillin/streptomycin (PAA), and 10% pooled human platelet lysate (hPL) [35 (link)]. The medium was supplemented with 0.1% heparin (5000 IU/ml; Ratiopharm, Ulm, Germany) to prevent coagulation [36 (link)].
Induced pluripotent stem cells were generated from three MSC preparations with episomal plasmids [37 (link)] and thoroughly characterized as described before [38 (link), 39 (link)]. iPSCs were cultured on tissue culture plastic (TCP) coated with vitronectin (0.5 mg/cm2) in StemMACS iPS-Brew XF (all Miltenyi Biotec, Bergisch Gladbach, Germany). Pluripotency was validated by in vitro differentiation and Epi-Pluri-Score (Cygenia GmbH, Aachen, Germany) [40 (link)].
Generation of iPSC-derived MSCs (iMSCs) was performed by switching culture conditions to standard hPL-medium and further passaging on 0.1% gelatin-coated plates [20 (link)]. Three-lineage differentiation potential of MSCs and iMSCs was validated as described before [41 (link), 42 (link)]. Cell images were taken on a digital EVOS FL Auto microscope (Thermo Fisher Scientific, Carlsbad, California, USA).
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9

Transgenic iPSC Generation via AAVS1 Locus

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The iPSCs were cultured in StemMACS iPS-Brew XF (Miltenyi Biotec) on Matrigel (BD Biosciences) coated plates at 37 °C and 5%CO2/5%O2 as described (Feyen et al, 2021 (link)). For transgene insertion, 250,000 iPSCs were nucleofected (1200 V, 20 ms, 1 pulse) with 60 pmoles sgRNA (Synthego) targeting the AAVS1 locus, 20 pmoles SpCas9 nuclease (Synthego) and 1 μg PE2-P2A-BFP plasmid using the Neon Transfection System (ThermoFisher Scientific) per the manufacturer’s instructions. When cells reached 75% confluency, they were dissociated by DPBS-EDTA at 37 °C for 7–10 min and replated in StemMACS iPS-Brew XF containing 5 μM Y-27632 (Selleckchem). For selection, the iPSCs were grown in the presence of 50 μg/ml G418 for 5 days. To ensure monoclonality, single-cell cloning was undertaken using the isoCell supplied by iotaSciences.f Expression of the transgene was confirmed by addition of 1.5 μg/ml Doxycycline Hyclate (Calbiochem) for 48 h.
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10

Feeder-Free Maintenance of hESC and hiPSC

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The hESC lines, H1 and H9, and hiPSC lines, 253G4 and 4A (HiPS-RIKEN-4A), were maintained in the human ESC medium as previously described.23 (link) The hESC lines (H1 and H9) were purchased from WiCell Research Institute (WI, United States). The cell lines 253G4 and 4A were kindly provided by Prof. Shinya Yamanaka (Kyoto University, Kyoto, Japan) and Dr. Yukio Nakamura (RIKEN BioResource Center, Tsukuba, Japan), respectively. All hPSC lines were transferred to feeder-free conditions. The hPSC colonies were detached from the feeder cells by CTK solution (0.1% collagenase IV, 0.25% trypsin, 20% KSR, and 1 mM CaCl2 in phosphate-buffered saline [PBS]). They were also passed through a 40-μm cell strainer to remove feeder cells, and the colonies remaining on the cell strainer were plated on vitronectin-coated (VTN; Life Technologies), Matrigel-coated (BD Matrigel hESC-qualified Matrix; BD Biosciences) or iMatrix-511-coated (nippi, Inc.) dishes in StemMACS™ iPS-Brew XF (Miltenyi Biotec) or Pluripro MATRIX-coated (CELL guidance systems) dishes in Pluripro media (CELL guidance systems). For single-cell-state culture, hPSC colonies were detached using Accutase (Innovative Cell Technologies) and were plated on VTN-, Matrigel-, or iMatrix-511-coated dishes in StemMACS iPS-Brew XF or Pluripro MATRIX-coated dishes in Pluripro media with 10 μM Y-27632 (Nacalai Tesque).
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