The largest database of trusted experimental protocols

25 protocols using biotin

1

Iterative Immunohistochemistry Optimization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Iterative rounds of immunostaining started with the first round of immunohistochemistry, as described above. After the microscope slide scanning, the coverslip was removed by soaking the slide in water, typically overnight on a shaker, until the coverslip fell off. Next, the chromogen was removed as described above. Heat-induced antigen retrieval was then completed as described previously, followed by a series of blocking steps. First, the slides were incubated for 30 min in 0.4% Triton-X 100. Then endogenous peroxidases were quenched with 0.3% H2O2 in methanol for 30 min. The samples were then incubated for 60 min in blocking buffer (10% normal goat serum, with 0.2% Triton-X 100, in tris buffer saline) at room temperature. Residual avidin and biotin was blocked by incubating in avidin (Vector Laboratories) diluted in blocking buffer for 1 h, washed three times in blocking buffer, and then incubated in biotin (Vector Laboratories) diluted in blocking buffer for 1 h. If the same species primary antibody was used, the samples were incubated in fragment antigen-binding region (FAB) (Jackson Immuno Research labs) overnight at 4 °C. For the remaining steps, we used the immunohistochemistry protocol described above. For each round of staining a no primary antibody control and positive control samples were included.
+ Open protocol
+ Expand
2

Immunohistochemical Staining of Bone Matrix Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibody against BSP was gifted by Dr. Larry Fisher at National Institute of Dental and Craniofacial Research. The mouse antibodies against DMP1 and DSP were applied as previously described [11 (link),12 (link)]. The polyclonal rabbit IgG against MEPE was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA), and the polyclonal rabbit IgG against OPN/SPP1 from Abcam, Inc. (Cambridge, MA). The secondary antibodies were mouse and rabbit IgG conjugated with biotin (Vector Laboratories, Inc., Burlingame, CA). The antibody against biotin was conjugated with peroxidase horseradish for DAB color development (Vector Laboratories, Inc., Burlingame, CA).
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Bone and Dentin Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the detection of SV40 T-Ag and the dentin or bone-specific proteins, polyclonal (rabbit) antibodies against ATF4, DLX3, MEPE, OSN, OCN (Santa Cruz Biotechnology, Inc., Snata Cruz, CA), OPN and OSX (Abcam, Cambridge, MA), and the monoclonal (mouse) antibodies against SV40 T-Ag, RUNX2 and COL1α1 were applied (Abcam). The antibodies against BSP (a gift from Dr. Larry Fisher, National Institue of Dental and Craniofacial Research), DMP1 and DSP were applied as previously described (Baba et al., 2004 (link); Huang et al., 2008 (link); Liu et al., 2014 (link)). The secondary antibodies were goat anti-rabbit or goat anti-mouse antibodies conjugated with Biotin (Vector Laboratories, Inc., Burlingame, CA). In the negative control groups, the primary antibodies were not used, while the secondary antibodies were the same as in the experimental groups.
+ Open protocol
+ Expand
4

Immunohistochemical Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The characteristics of all primary antibodies used in this study are summarized in Supplementary Table S1.
Tissue sections (7 μm of thickness) were deparaffined and incubated in H2O2 to inhibit endogenous peroxidase. Sections were rinsed in water and then incubated with a blocking solution [10% normal rabbit serum in TBS (Tris 0.01 M, NaCl 0.15 M, pH 7.4)]. After this incubation, sections were incubated overnight with the primary antibody solution and then incubated with anti-mouse or anti-rabbit antibodies conjugated to biotin (Vector) followed by the ABC complex (Vector). Sections were revealed with a peroxidase substrate, a solution of diaminobenzidine as a chromogen (DAKO). Sections immunolabeled with anti-amyloid antibodies were pre-treated with 99% formic acid (Stygelbout et al., 2014 (link)). Tissue sections were stained with hematoxylin, Thioflavin T, Gallyas staining, or DAPI for histological examination as previously described (Ando et al., 2011 (link); Leroy et al., 2012 (link); Poncelet et al., 2019 (link)).
For detection of immunoglobulin extravasation, sections were incubated directly with anti-mouse antibody conjugated to biotin (Vector) followed by the ABC complex (Vector) without primary antibody. Sections were revealed with a peroxidase substrate, a solution of diaminobenzidine as a chromogen.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of IL-26 in FFPE Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
FFPE sections were incubated at 60 °C overnight and subsequently washed in a decreasing ethanol series. The sections were incubated for 20 min with demasking solution (pH 9; Dako Target Retrieval), washed in PBS and subsequently incubated in H2O2 for 10 min. After washing, the sections were incubated with 10% human serum and streptavidin (Vector Laboratories, USA) for 30 min at room temperature (RT). The primary antibodies, anti-IL-26 (Clone: 197505 unconjugated, R&D Systems, USA) and mouse IgG2b isotype (BD Biosciences, USA), were diluted in 1% human serum/PBS and biotin (Vector Laboratories, USA), adjusted to 2 µg/mL and incubated overnight at 4 °C. After washing, the sections were incubated with 10% horse serum for 15 min at RT. Thereafter the secondary antibody (biotinylated anti-mouse IgG; VectaStain) was applied for 30 min at RT. The sections were then incubated with streptavidin horseradish peroxidase (HRP, Dako Agilent Technologies, USA) for 45 min at RT followed by incubation with the AEC 2-Components Kit (DCS Chromokine, Germany) at RT and counterstaining with hematoxylin.
+ Open protocol
+ Expand
6

Histopathological Evaluation of Mouse Pancreatic Lesions

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histopathology, mouse tissue specimens were fixed in 4% buffered formalin overnight, embedded in paraffin and sectioned (2.5 μm thick). Quantification and grading of mouse ADM and PanIN lesions was performed on three sections per mouse and 3 mice per time point according to the established nomenclature for the grading of PanIN lesions in mice47 (link). The examiner was blinded to the genotype of the animals. Alcian blue staining was performed on paraffin embedded tissue sections using aqueous alcian blue solution (pH 2.5). Sections were counterstained with nuclear fast red, as previously described17 (link). Toluidine blue staining of mast cells was performed using an aqueous toluidine blue staining solution (pH 2.0) for 10 min (all staining solutions from Sigma). For immunodetection, formalin-fixed paraffin-embedded tissue sections were dewaxed, rehydrated and placed in a microwave (10 min, 600 watt) to recover antigens. Sections were incubated with primary c-Kit (C-19; sc-168; 1:50; Santa Cruz Biotechnology, Santa Cruz, CA), p53 (NCL-p53-CM5p; rabbit, 1:400; Novocastra/Leica Mikrosysteme, Wetzlar, Germany) and Pdpk1 (Pdk1, #3061; rabbit, 1:50; Cell Signaling Technology, Danvers, MA) antibodies followed by a secondary antibody conjugated to biotin (Vector Laboratories, Burlingame, CA).
+ Open protocol
+ Expand
7

Retinal Cell Immunohistochemistry After NMDA

Check if the same lab product or an alternative is used in the 5 most similar protocols
At 12, 24, and 48 h after injecting NMDA or PBS, eyes were enucleated (three cohorts of six, n = 18), fixed in 4% paraformaldehyde, embedded in OCT compound, and ten micron-thick retinal cross sections were prepared according to the methods published previously [24 (link)]. Retinal cross sections were immunostained with antibodies (1:100 dilution) against DREAM, Tuj1, Calretinin, and PKC-alpha, and a secondary antibody (1:200 dilution) conjugated to either biotin (Vector Laboratories, Burlingame, CA) or AlexaFlour-568 and 488 (Invitrogen, Carlsbad, CA). The number of Calretinin and PKC-alpha-positive cells in retinal cross sections was quantified from photomicrographs of four microscopic fields of identical size, equal distance from the optic disc.
+ Open protocol
+ Expand
8

Histological Analysis of Mouse Liver

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded sections were deparaffinized by xylene and rehydration in concentration gradients of ethanol. The sections were immersed in 0.1% H2O2 (Sigma-Aldrich, St.Louis, MO) for 30 min and then blocked with avidin and biotin (Vector, SP-2002) for 15 min each. After blocking with 1% bovine serum albumin for 5 min, sections were incubated with biotinylated Ulex Europaeus Agglutinin I (UEA, Vector, Burlingame, CA) overnight at 4°C. Sections were then washed with TBST, and incubated with Streptavidin, Horseradish Peroxidase for 30 min. Then the sections were stained by DAB solution (Vector, Burlingame, CA) for 2 min, and hematoxylin for 1 min for counterstaining. A negative staining control was performed by using PBS instead of UEA.
Formalin-fixed and paraffin-embedded mouse livers were stained with hematoxylin-eosin (Leica Biosystems Inc., Wetzlar, Germany) using standard staining protocols. Frozen liver sections were stained with Oil Red O (Sigma-Aldrich, St.Louis, MO).
+ Open protocol
+ Expand
9

Glycan Immobilization and Hemagglutinin Binding Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lyophilized biotinylated sialoglycopolymers were reconstituted in a molecular grade H2O and further diluted in HBS-EP buffer before being immobilized on the SA chip to a maximum response of approximately 400 relative response units (RU) using standard protocol recommended by the manufacturer. Glycan Neu5Ac(α2,8)Galb1-biotin was immobilized on flow cell 1 (Fc1) and served as a negative control for hemagglutinin binding. Glycan 3′SLN-PAA-biotin was used both as a negative control for H1 hemagglutinin and specific receptor for H5 hemagglutinin and immobilized on flow cell 3 (Fc3). Glycan 6′SLN-PAA-biotin was used both as a negative control for H5 hemagglutinin and specific receptor for H1 hemagglutinin and immobilized on the flow cell 2 (Fc2). Free streptavidin binding sites on the chip were blocked following glycan immobilization with two consecutive 10 s pulses of biotin (Vector Laboratories, Cat. # SP-2001) at high concentrations.
+ Open protocol
+ Expand
10

Immunostaining of Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunostaining was performed on 4μm sections from frozen and formalin fixed paraffin-embedded (FFPE) tissue as previously described [57 (link)]. Briefly, frozen sections were allowed to air-dry and OCT compound was removed in PBS (pH 7.4). Paraffin sections were deparaffinized and blocked for biotin (Vector Labs, Burlingame, CA). Background buster (Accurate Chemical & Scientific, Westbury, NY) was used to block non-specific antibody binding. The appropriate biotinylated secondary antibody (Vector Laboratories) was applied followed by Streptavidin, AlexaFluor 647 conjugate (Life Technologies - Molecular Probes, Grand Island, NY). All immunofluorescence samples were mounted using Vectashield with DAPI (Vector Labs, Burlingame, CA). As a negative control, staining was performed without primary antibody.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!