The largest database of trusted experimental protocols

34 protocols using pam 2100

1

Chlorophyll Fluorescence of Seedlings

Check if the same lab product or an alternative is used in the 5 most similar protocols
After gas exchange measurements, we estimated the chlorophyll fluorescence parameters on the same leaves used for the gas exchange measurements using a portable pulse-modulated fluorometer (PAM-2100; Walz, Effeltrich, Germany) connected to a computer running control software. One B. controversum seedling and one C. glauca seedling were randomly selected in each patch. Total eight seedlings (four B. controversum seedlings and four C. glauca seedlings) were measured in four selected patches (the same four patches as those measured in light intensity).
For consecutive measurements of chlorophyll fluorescence parameters, we marked a fixed position on each sampled leaf. To measure the minimal fluorescence (F0) and maximal fluorescence (Fm) parameters, the sample was first dark-adapted for at least 20 min using a leaf clip. The maximal photochemical efficiency of PSII (Fv/Fm = (Fm − F0)/Fm) was calculated. The photochemical quenching (qP), nonphotochemical quenching (qN), actual photochemical efficiency of PSII in the light (ΦPSII), and apparent electron transport rate (ETR) were measured at 2-h intervals from 6:00 to 18:00 on 23–29 July 2012.
+ Open protocol
+ Expand
2

Photosynthetic Efficiency and Stomatal Conductance

Check if the same lab product or an alternative is used in the 5 most similar protocols
The maximum photochemical efficiency of photosystem II (Fv/Fm) at dark-adapted leaves was estimated with a fluorometer PAM-2100 (Walz, Effeltrich, Germany). The leaf stomatal conductance rate (gs) was monitored with a leaf porometer SC-1 (Decagon Devices, Pullman, WA, USA).
+ Open protocol
+ Expand
3

Chlorophyll Fluorescence Determination Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Determination of leaf chlorophyll (Chl) fluorescence was made by pulse-amplitude-modulation fluorometer (PAM 2100, H. Walz, Effeltrich, Germany). Before measuring the Chl fluorescence parameters, leaves were placed in a dark-adapted state for 30 min using light exclusion clips. After irradiating the measuring light (1 µmol•m -2 •S -1 ) and saturating illuminations (3000 µmol•m -2 •S -1 ), the minimum Chl fluorescence yield in the dark-adapted state (F 0 ) and maximum Chl fluorescence yield in the dark-adapted state (F m ) were measured. After irradiating the light (150 µmol•m -2 •S -1 ) and saturating illuminations, we measured the minimum Chl fluorescence yield in the light-adapted state (F 0 ), maximum Chl fluorescence yield in the light-adapted state (F m ), and steady-state Chl fluorescence yield in the light-adapted state (F s ). Using these parameters, we calculated the maximum photosystem II (PSII) photochemical efficiency (F v /F m = (F m -F 0 )/F m ) and quantum yield of PSII electron transport (ΦPSII = (F m -F s )/F m ) [31] . The Chl-a, Chl-b, and total Chl were extracted based on the method of Lichtenthaler (1987) (link) [32] (link).
+ Open protocol
+ Expand
4

Fluorescence-Based Leaf Energy Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to the method of Zhang (2019a) , the following fluorescence parameters were determined. The sixth fully developed leaf was measured from 9:00 to 11:00 using a portable modulated chlorophyll fluorescence instrument (PAM-2100, WALZ, Germany). The initial fluorescence (F0) was determined after 20 min of dark acclimation, and the maximum fluorescence (Fm) was determined by irradiation saturation pulse (2,800.0 μmol·m−2·s−1). The steady-state fluorescence (Ft) under light adaptation was measured by switching on the endogenous photochemical light (600.0 μmol·m−2·s−1) for 5 min, and the maximum fluorescence (Fm′) under light adaptation was measured by switching on the saturation pulse (2,800.0 μmol·m−2·s−1) at 20-s intervals. Fluorescence parameters and leaf light energy distribution were determined according to the following formulas.
We determined the light energy distribution of the leaf, including the dissipation part of antenna [D = 1 − (Fm′ − F0′)/Fm′], the photochemical reaction part [P = qP × (Fm′ − F0′)/Fm′], the dissipation part of the reaction center [E = (1 − qP) × (Fm′ − F0′)/Fm′], and the excitation energy distribution imbalance between photosystem (PS)II and PSI: β/α − 1 = (Fm′ − F0)/(Fm′ − Fs)− 1.
+ Open protocol
+ Expand
5

Evaluating Photochemical Activity in Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Based on fluorescence induction kinetics, fluorescence parameters and ratios have been established to assess photochemical activity of plants. The parameters of in vivo chlorophyll fluorescence were detected with a PAM 2100 (Heinz Walz GmbH, Germany) modulated light fluorometer as described [33] . Samples were dark-adapted for 20 minutes. After dark adaptation, the initial fluorescence (F 0 ) was excited by weak light (0.1 μmol m -2 s -1 ) and the maximal fluorescence (F m ) was induced by white saturating flash light (8000 μmol m -2 s -1 ). The actual photochemical efficiency of PSII as yield (∆F/F m' =(F m' -F t )/F m' ) was measured on the last fully developed leaves -at the end of growing period -on light-acclimated conditions under natural light between 11:00-12:00 h. The photosynthetically active radiation was around 1200 μmol m -2 s -1 and the temperature was around 30 °C.
+ Open protocol
+ Expand
6

Cucumber Plant Stress Response Measurement

Check if the same lab product or an alternative is used in the 5 most similar protocols
After heat stress for 12 d, three cucumber plants were collected and washed with ddH2O. Then, the remaining water was sucked up, and the FW was detected using an electronic balance (Huazhi, Putian, China). The plant was enclosed in an envelope and placed in an oven (DHG-9030A, Shanghaiyiheng, China) for 30 min, which was set at 105°C. Then, the plant was dried at 75°C for 2 d to measure the DW. For measurement of the Chl fluorescence parameters, cucumber plants at 12 d of heat stress were placed in the dark for 30 min and were detected using a portable fluorimeter (PAM-2100, Walz, Effeltrich, Germany) [51 (link)].
+ Open protocol
+ Expand
7

Photosynthetic Measurements of Plant Varieties

Check if the same lab product or an alternative is used in the 5 most similar protocols
The water potential (Ψw, MPa) was measured with a Schölander pressure pump (model PMS-1000, PMS Instruments, Corvallis, OR, United States). Stomatal conductance (gs, mmol H2O m−2s−1), the sub-stomatal concentration of CO2 (Ci), photosynthetic rate (A, μmol CO2 m−2s−1), transpiration (E, mmol H2O m−2s−1), water use efficiency (WUE, μmol CO2 mmol−1H2O) and leaf temperature through infrared Thermometry (Tleaf, °C), were determined with a CIRAS-3 portable photosynthesis system (PP Systems, Amesbury MA). The measurements were recorded under saturating light conditions (1,500 μmol quanta m−2 s−1), with a temperature of 25°C, and ambient CO2 concentration of 400 mol−1 CO2 and a relative humidity of ~55%. Chlorophyll fluorescence indices (i.e., Fv/Fm and Quantum yield) were measured with a portable pulse-amplitude modulated chlorophyll fluorometer (PAM-2100, Heinz Walz, Effeltrich, Germany). These measurements of the photosystem II efficiency were performed once the plants were adapted to darkness for 30 min, on the same leaves where stomatal conductance and photosynthesis were determined. All measures were performed on the third youngest full-developed leaf of each plant, analyzing a total of five plants per variety.
+ Open protocol
+ Expand
8

Photosynthetic Parameters and Chlorophyll Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The photosynthetic parameters of leaf surface were measured by portable photosynthetic instrument LI-6400 (LI-Cor Inc., Lincoln, NE, USA). The light intensity was 1000 µmol/m2/s, and the flow rate was 500 mL/s when the parameters were measured. In addition, the temperature was 25–28 °C. We selected the third leaf for experiment, and three biological replicates were collected for each treatment.
Chlorophyll fluorescence was measured by the portable fluorescence instrument German WALZ PAM2100 after 0, 24, 48, and 72 h of treatment. The time of dark processing was 20–30 min. Three biological replicates were collected.
The chlorophyll content was measured by select the leaf of latest expanded for the experiment. We collected leaves of 0.1 g and cut them into filaments. We then put the filaments of the leaf into 25 mL acetone solution (80%) and soaked the sample for 24 h in the dark. OD was measured by spectrophotometer by colorimetric determination at 663 nm and 645 nm. The chlorophyll content was calculated as follows:

Ca and Cb, respectively, are concentrations of chlorophyll a and chlorophyll b. D663 and D645 are absorbance of 663 nm and 645 nm, respectively. W is fresh weight of sample, and V is volume of extract.
+ Open protocol
+ Expand
9

Photosynthetic and Fluorescence Parameters

Check if the same lab product or an alternative is used in the 5 most similar protocols
The net CO2 assimilation rate (Pn), stomatal conductance (Gs), and intercellular CO2 concentration (Ci) were measured with a portable open-flow gas exchange system (LI-6400, LI-COR Inc., United States), between 9:00 and 11:00 h, on fully expanded leaves that were at similar stages of development. During this time, relative air humidity, CO2 concentration, and photon flux density were maintained at 60–70%, 380 μmol mol-1 and 800 μmol m-2 s-1, respectively. Intrinsic water use efficiency (WUEintr) was calculated by dividing the instantaneous values of Pn by Gs. The maximum quantum efficiency of photosystem II (Fv/Fm) of the leaves was measured with a portable pulse amplitude modulated fluorometer (PAM-2100, Walz, Effeltrich, Germany), where the leaves were dark-adapted with clips for 20 min. After this time, minimal fluorescence (Fo) was measured under a weak pulse of modulating light over 0.8 s, and maximal fluorescence (Fm) was induced by a saturating pulse of light (8,000 mmol m-2 s-1) applied over 0.8 s. Fv/Fm was calculated, where Fv was the difference between Fm and Fo.
+ Open protocol
+ Expand
10

Leaf Physiological Measurements

Check if the same lab product or an alternative is used in the 5 most similar protocols
The net CO 2 assimilation rate (P n ), stomatal conductance (G s ) and inter-cellular CO 2 concentration (C i ) and transpiration rate (E) were measured on fully expanded leaves at similar development stages with a portable open-flow gas exchange system (LI-6400, LI-COR Inc., Lincoln, NE). Measurements were performed in the late morning (9:00-11:00 h). The relative humidity of the air, concentration of CO 2 and photon flux density were maintained at 60-70%, 380 μmol mol -1 and 800 μmol m -2 s -1 in all measurements respectively. The same leaves were used to measure the maximum quantum efficiency of photosystem II (F v /F m ) with a portable pulse amplitude modulated fluorometer (PAM-2100, Walz, Effeltrich, Germany), where the leaves were dark-adapted with clips for 20 min. After this time, minimal fluorescence (F o ) was measured under a weak pulse of modulating light over 0.8 s, and maximal fluorescence (F m ) was induced by a saturating pulse of light (8000 mmol m -2 s -1 ) applied over 0.8 s. F v /F m was calculated, where F v is the difference between F m and F o .
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!