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30 protocols using oct embedding matrix

1

Murine Blood and Tissue Sampling

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Mice were euthanized in a controlled CO2 chamber (TEM Sega) and blood sampling was performed through cardiac puncture with a heparin-coated syringe with a 25 G needle. Blood was centrifuged at 300 g for 15 min and plasma was harvested and kept at −80 °C for later analysis. RBC were lysed in 5 mL of RBC lysing buffer for 5 min at rt and washed with 10 mL of PBS. This procedure was repeated 3 times and cells were resuspended in PBS. The left kidney was harvested and embedded in OCT embedding matrix (Cellpath) and snap-frozen in liquid nitrogen and kept at −80 °C for later analysis. For cell analysis, spleen and lymph nodes (cervical, brachial, and inguinal) were harvested in PBS and dissociated by mechanical disruption on a 40 μm cell strainer (Falcon, Corning). For splenocytes, RBC were lysed once in 5 mL RBC lysing buffer 5 min at rt and washed with 10 mL of PBS. Cell counts were assessed by trypan-blue staining on a Malassez hemacytometer and 1 to 5 million cells were used per FACS staining condition. For immunofluorescence analysis, spleen was harvested and embedded in OCT embedding matrix (Cellpath) and snap-frozen in liquid nitrogen, and kept at −80 °C for later analysis.
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2

Immunofluorescence Staining of Kidney Tissues

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Animals were perfused through the left cardiac ventricle with a pre-fixative solution (1000 U/ml Heparin, 0.2% procain-HCl, 3.2% CaCl2 and 0.18% NaCl) followed by the fixative (3% Paraformaldehyde (PFA)/PBS). After incubation in PFA for one hour, kidneys were placed overnight in 32% sucrose/PBS and subsequently embedded in OCT embedding Matrix (Cell Path, Newtown, Wales, United Kingdom) and frozen in liquid propane. Cryosections of 5 μm were mounted on slides (Superfrost Plus, Thermo Scientific) and blocked with 3% bovine serum albumin/PBS; the primary antibodies against MCT14 (1/1000), NKCC2 [25 (link)] (1/1000), Uromodulin [26 (link)] (1/400), NCC [27 (link)] (1/500) or NaPi-IIa [28 (link)] (1/400) were diluted in PBS and added to the cryosections for incubation over night at 4°C. Then, samples were washed twice with hypertonic PBS (18g NaCl/PBS), once with PBS and incubated with the secondary antibodies donkey anti-rabbit Alexa 594, donkey anti-sheep Alexa 488 and goat anti-guinea-pig Alexa 488 (1/1000, Invitrogen) during 2 hours at room temperature. After two consecutive washing steps with hypertonic PBS and once with PBS, cover slips were mounted with Glycergel (DakoCytomation, Baar, Switzerland). Fluorescence was detected with a Leica fluorescence microscope (Leica CTR600). Leica AF lite and Image J freeware programs were used to process the pictures.
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3

Lipopolysaccharide-free FH Protein Injection

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All materials administered to animals were subjected to lipopolysaccharide removal,44 (link) and were confirmed to be lipopolysaccharide free by the method of Moesby et al.45 (link) Based on the FH dose used successfully in Fakhouri et al.,14 (link) mice were injected intraperitoneally with serum-derived full-length human FH (3 nmol/465 μg per animal), FH1–5^18–20 (12 nmol/710 μg), or FH1–5 (12 nmol/424 μg) in identical volumes of PBS, or PBS alone. Blood was collected onto EDTA via tail venesection before injection and at serial time points thereafter, with plasma separated via centrifugation for storage at −80 °C. Mice were killed at the indicated time points, and the kidneys were collected into PBS and snap frozen in OCT embedding matrix (CellPath, Newtown, UK) for storage at −80 °C.
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4

Evaluating Complement Factor H in Mice

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All material administered to animals was subjected to LPS removal 44 (link) and confirmed LPS-free by the method of Moesby et al 45 (link). Based on the FH dose used successfully in Fakhouri et al14 (link), mice were injected intra-peritoneally with serum-derived full-length human FH (3nmol/465μg per animal), FH1-5^18-20 (12nmol/710 μg) or FH1-5 (12nmol/424 μg) in identical volumes of PBS, or PBS alone. Blood was collected onto EDTA via tail venesection prior to injection and at serial time points thereafter, with plasma separated via centrifugation for storage at −80°C. Mice were sacrificed at the indicated time points, and the kidneys were collected into PBS and snap-frozen in OCT embedding matrix (CellPath Ltd, UK) for storage at −80°C.
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5

Skeletal Muscle Tissue Harvesting

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Tissue collection was performed 24 h fter the last exercise session after a 4 h fast. Mice were anaesthetized using Ketamine (80-100 mg/kg), Xylazine (10-15 mg/kg) and Acepromazine (2-5 mg/kg) via intraperitoneal injection 5 min before sacri ce. The depth of anesthesia was con rmed by testing pedal withdrawal re ex. Subsequently, the m. soleus (SOL), m. plantaris (PLT), m. gastrocnemius (GAS), m. tibialis anterior (TA), and m.extensor digitorum longus (EDL) were harvested, weighed and frozen in OCT embedding matrix (CellPath) in liquid nitrogen-cooled isopentane for histochemical analysis or xed in 4% PFA for single myo ber isolation. Tibia length was assessed by a digital caliper. After sample collection, animals were euthanized and major bleeding was induced to con rm death.
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6

Skeletal Muscle Tissue Harvesting

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Tissue collection was performed 24 h fter the last exercise session after a 4 h fast. Mice were anaesthetized using Ketamine (80-100 mg/kg), Xylazine (10-15 mg/kg) and Acepromazine (2-5 mg/kg) via intraperitoneal injection 5 min before sacri ce. The depth of anesthesia was con rmed by testing pedal withdrawal re ex. Subsequently, the m. soleus (SOL), m. plantaris (PLT), m. gastrocnemius (GAS), m. tibialis anterior (TA), and m.extensor digitorum longus (EDL) were harvested, weighed and frozen in OCT embedding matrix (CellPath) in liquid nitrogen-cooled isopentane for histochemical analysis or xed in 4% PFA for single myo ber isolation. Tibia length was assessed by a digital caliper. After sample collection, animals were euthanized and major bleeding was induced to con rm death.
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7

In Situ Detection of β-Galactosidase Expression

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The procedure for in situ detection of b-galactosidase expression using X-Gal staining was described previously (Bonnerot & Nicolas 1993 , Vernet et al. 1993) . Pre-implantation embryos were obtained from CD-1 females mated with hybrid (129S2/CD-1) heterozygous or homozygous mutant males. b-Galactosidase expression was analyzed in freshly recovered fertilized eggs, two-cell and morula embryos. Expression was assessed in blastocysts after in vitro overnight culture of morula embryos in M16 medium at 37°C with 5% CO 2 in air. Post-implantation embryos were obtained from heterozygous females mated with hybrid (129S2/CD-1) homozygous males and expression was assessed immediately after recovery at E7.0. After whole-mount X-Gal staining, fetal and post-natal gonads (E13.5 to P2) were fixed in 2% paraformaldehyde (PFA) overnight and then dehydrated and embedded in paraffin wax. Sections of 5 mm size were cut and counterstained with nuclear fast red (Vector). P12 ovaries were fixed and transferred in 1X PBS with 30% (w/v) sucrose for 48 h, then embedded in OCT embedding matrix (CellPath, Newtown, Powys, UK) and snap-frozen in liquid nitrogen. Cryostat sections of 10-12 mm size were mounted on glass slides and X-Gal stained overnight. After washing with 1X PBS, sections were counterstained with nuclear fast red.
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8

Cryosectioning and Immunofluorescence Analysis

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LNs were freshly harvested from mice and embedded in OCT embedding matrix (Cell Path), or for tdTomato analysis pre-fixed in 4% PFA/PBS, and frozen in liquid nitrogen. Organs were cut into sections using the cryostat (Leica CM3050 S) and fixed in cold acetone for 20 min before freezing at À80 C. Sections were blocked with PBS containing 2% normal goat serum or 2% fetal bovine serum. For cell staining, antibodies and reagents were used (see key resource table) and DAPI (Sigma-Aldrich) was used to stain nuclei. Sections were mounted with Fluoromount-G (Invitrogen, Thermo Fisher Scientific). Images were acquired on a Microscope Zeiss Axio Observer Z1 Confocal LSM780 and LSM710 (Carl Zeiss) with the Carl Zeiss proprietary software Zen and on a spinning disk inverted microscope (Carl Zeiss) with a confocal head Yokogawa CSU and a Metamorph software (Metamorph). For Cd169-directed tdTomato expression analysis, sections were imaged using a Keyence BZ-X700 microscope. Analysis of all microscopic images was done using the open source imageJ-based Fiji distribution.
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9

Mouse Adrenal Tissue Preparation for RNAscope

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Mouse adrenals were freshly harvested under anesthesia and processed for embedding (O.C.T. embedding matrix; Cell Path). Embedded and frozen adrenals were cut into 12-μm thick sections, mounted onto Superfrost Plus slides (Thermo Fisher Scientific), and then stored at −80 °C until further use. Slides were fixed in 10% neutral-buffered formalin for 15 minutes at 4 °C and were dehydrated in gradient ethanol solution. Sections were used for manual RNAscope assay using RNAscope detection kit (Advanced Cell Diagnostics). Probes were ordered from Advanced Cell Diagnostics using the custom probe design service.
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10

Adipocyte Quantification in Cryosections

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EAT was immediately fixed with 4% paraformaldehyde in 0.1 M phosphate buffer at 4°C overnight and rinsed in 0.1 M phosphate buffer saline (pH 7.4). EAT were cryoprotected in 30% sucrose solution and frozen in OCT embedding matrix (Cell Path, United Kingdom). 8 μm coronal sections were prepared using a cryostat (Leica, CM3050). Images were acquired using a 10-fold lens with a DMX 1200 camera (Nikon) coupled to ACT-1 software. At least 150 adipocytes were counted for each mouse. Cell surfaces were obtained by dividing the number of cells by the surface of the observed area (0.075 mm2).
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