The largest database of trusted experimental protocols

12 protocols using quantitect transcription kit

1

Quantifying Target Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
We examined the relative expression levels of target genes in four groups (EGFP RNAi, DjHRJDa RNAi, DjHRJDb RNAi, and double knockdown [DKD]) by real-time PCR. We extracted total RNA from the whole bodies of 15 individual D. japonica samples in each group, and cDNA was synthesized using a QuantiTect Transcription Kit (Qiagen). We carried out quantitative analysis as previously described in Nishimura et al. (2012) (link). The sequences of primers used for all experiments are shown in supplementary table S2, Supplementary Material online.
+ Open protocol
+ Expand
2

RNA Extraction and qRT-PCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cultured satellite cells and muscles using RNeasy Mini Kit (Qiagen) and miRNeasy Mini Kit (Qiagen), respectively. Pieces of muscle tissues collected from frozen TA muscles were crushed in QIAzol Lysis Reagent (Qiagen) using a Shakeman homogenizer (Bio Medical Science). Complementary DNA (cDNA) was synthesized using QuantiTect Transcription Kit (Qiagen). qRT-PCR was performed with SYBR Premix Ex Taq II (Takara) on a Takara Thermal Cycler Dice Real Time System (Takara) under the following cycling conditions: 94°C for 30 s followed by 40 cycles of amplification (94°C for 5 s, 60°C for 20 s, 72°C for 12 s) and dissociation curve analysis. For gene expression analysis in regenerating TA muscles and differentiating satellite cells, mRNA expression was normalized with Cmas. Relative mRNA expression was then calculated using the 2–ΔΔ method. Specific primers used for qRT-PCR were listed in Supplementary Table 1. Primers for Actb were provided from QuantiTect Primer Assays Kit (Qiagen).
+ Open protocol
+ Expand
3

Quantitative PCR of gene expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from peripheral blood leukocytes using TRIZOL reagent (Life Technology) and reverse transcribed using the Quantitect Transcription kit (Qiagen), according to the manufacturer's instructions. Oligos for qPCR were designed using the Primer express program [Rozen and Skaletsky, 2000 (link)] with default parameters. EEF1A1 and GAPDH were used as references genes. qPCR reactions and calculations were made as reported in Ferrero et al. (2010 (link)). Significance was determined by a two-tailed unpaired t-test for means.
+ Open protocol
+ Expand
4

Cardiac RNA Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from the different heart segments was extracted following the QiAzol protocol (Qiagen, Germany). Purity and quantity of RNA were determined using the NanoDrop 1000 (Thermo Fisher Scientific, Waltham, MA, USA). RNA integrity was assessed by gel electrophoresis on 1.2% (w/v) agarose gels (Sigma-Aldrich) stained with SYBR safe DNA gel stain (Thermo Fisher Scientific). One microgram of total RNA from each sample was reverse transcribed using the reverse QuantiTect transcription kit (Qiagen), following the manufacturer’s protocol.
+ Open protocol
+ Expand
5

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIZOL reagent (Life Technologies). Integrity and purity of RNAs were measured by using Agilent 2100 Bioanalyzer (Agilent Technologies) and reverse-transcribed by Quantitect Transcription kit (Qiagen), according to the manufacturer’s instructions.
Oligos for qPCR were designed using the Primer express program [14 (link)] with default parameters, with EEF1A1 and TBP as references genes. qPCR reactions and calculations were made as reported in [15 (link), 16 (link)], mRNA from NHA cell line was used as reference sample for cell line, while commercially available RNAs (Agilent Technologies) from brain of 4 healthy individuals were used in tissues gene expression studies, respectively.
+ Open protocol
+ Expand
6

miR-151-5p Regulation in MCF-7 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MCF-7 cells were transfected with miR-151-5p mimic or miR-151-5p hairpin inhibitor by using Lipofectamine 2000 (TermoFischer). Total RNA was extracted from cells using the RNase mini Kit (TermoFischer) and reverse-transcribed by the Quantitect Transcription kit (Qiagen), according to the manufacturer's instructions. Oligos for qPCR were designed using the Primer express program [35 (link)] with default parameters, with EEF1A1 and 18S as reference genes. qPCR reactions and calculations were made as reported in [36 (link), 37 (link)].
+ Open protocol
+ Expand
7

Comprehensive RNA Extraction and Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using Trizol (Invitrogen). First-strand cDNA was generated using a Quanti-Tect Transcription Kit (Qiagen). The quantitative real-time PCR (RT-PCR) mixtures were prepared using SYBR Green PCR Master Mix and run on an ABI7900HT Fast RT-PCR System (Applied Biosystems, Carlsbad, CA, http://www.lifetechnologies.com/applied-biosystems). RT-PCR was carried out using relative expression levels of pertinent genes that were normalized against GAPDH. Immunostaining was performed according to a standard protocol, using primary antibodies including Nestin (1:100, Santa Cruz), Tuj1 (1:500, Covance, Princeton, NJ, www.covance.com), Myosin (1:100, Developmental Hybridoma Studies Bank) and Gata4 (1:100, Santa Cruz). Alexa Flour fluorescent secondary antibodies (Invitrogen) were used at a dilution of 1:2,000 and nuclei were stained with DAPI (1:5,000).
+ Open protocol
+ Expand
8

RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the stimulation cells were rinsed with PBS. For lysing the cells, 1:100 solution of β-Mercaptoethanol (Sigma-Aldrich) in RNeasy Lysis Buffer (Qiagen, Hilden, Germany) was used. Total RNA was isolated using RNeasy Mini Kit (Qiagen) using the protocol provided by the manufacturer. Finally, RNA quantity was assessed with the NanoDropTM 2000 Spectralphotometer (Thermo Fisher Scientific). cDNA synthesis was performed with Mastercycler® (Eppendorf, Hamburg, Germany) using the QuantiTect Transcription Kit (Qiagen) as instructed by the manufacturer.
+ Open protocol
+ Expand
9

RNA Isolation and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA from cultivated cells was isolated using the GeneUP total RNA mini Kit (Biotechrabbit, Henningsdorf, Germany) according to the manufacturer's protocol. RNA concentration and purity were evaluated photometrically (FLUOstar Omega, BMG LAB-TECH, Ortenberg, Germany). According to the manufacturer's recommendations, the total RNA (10 ng) was converted to cDNA by reverse transcription with the QuantiTect Transcription Kit (Qiagen, Hilden, Germany). All primers used in this study were obtained from Biolegio (Nijmegen, The Netherlands). Primer sequences and PCR parameters are listed in Table 1. The samples were amplified and quantified on a LightCycler 96 (Roche, Mannheim, Germany). PCR product integrity was evaluated by melting point analysis and agarose gel electrophoresis. The threshold cycle (CT) was normalized to housekeeping ribosomal protein L13a (RPL13a; ΔCT). Data are depicted as 2 (-ΔΔCT) . RT-qPCR was performed in technical triplets, and each experiment was conducted in at least biological triplicate. Mean values ± SEM were calculated for all samples.
+ Open protocol
+ Expand
10

Quantifying Porcine JAZF1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
To evaluate the expression of porcine JAZF1 in different tissues, RNA was isolated from 10 mg tissue using the RNA extraction kit (Qiagen, China) following manufacturer instructions. Total cDNA was generated with QuantiTect Transcription Kit (Qiagen). SYBR Green primers were designed using the Premier 5.0 software (Table 1). qPCR was carried out in a real-time PCR System (ABI, USA). The results were calculated with the relative quantification method with glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as the reference gene. JAZF1 expression levels were calculated by the 2 -∆∆Ct comparative method. qPCR amplifications were carried out in a final volume of 20 µL comprising 10 µL 2X qPCR Mix (ABI), 1 µL of each primer (10 µM), 1 µL template cDNA, and 8 µL ddH 2 O with the following program: 95°C for 2 min and 40 cycles of 95°C for 10 s, 60°C for 40 s, and 72°C for 30 s.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!