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28 protocols using liberase tl research grade

1

Isolation of Mouse Pancreatic Islets

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Isolation of mouse islets was performed following the hand-picking protocol described previously (14 (link)), with some modifications. Briefly, after clamping the common bile duct at a point close to the duodenum outlet, 2.5 mL Krebs-Ringer bicarbonate HEPES buffer (pH 7.4) comprising 0.5% BSA and 0.4 mg/mL Liberase TL Research Grade (Roche, Basel, Switzerland) were injected into the duct. The swollen pancreas was extracted and incubated at 37°C for 20 min. The pancreas was then dispersed by pipetting, and after washing twice with Krebs-Ringer bicarbonate HEPES buffer, the islets were obtained manually under a stereomicroscope.
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2

Isolation of Stromal Vascular Fraction

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The isolation of SVF cells was done by a previously described methodology, with slight modifications14 (link),17 (link). Briefly, 1–2 g of SAT or MAT were incubated with Hanks’ balanced salt solution supplemented with 10 mM HEPES (both from Sigma-Aldrich), 4% BSA (Biowest), and 0.125 mg/mL Liberase™ TL Research Grade (Roche Diagnostics, Risch-Rotkreuz, Switzerland) in a water bath at 37 °C during 60–90 min with manual agitation every 10 min. Digested samples were then passed through a 100-μm cell strainer and centrifuged at 280×g for 10 min at 4 °C. The pellet, corresponding to the SVF cells, was resuspended in complete RPMI medium.
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3

Isolation of Pancreatic Islets from DNAJC3 Knockout Mice

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Pancreatic islets from 3- to 4-week-old DNAJC3 K.O. and C57BL/6 wild-type littermates (control mice) were isolated, following the method described by Yesil et al. with minor modifications [27 (link)]. The pancreatic tissues were enzymatically digested with Liberase TL Research Grade (Roche, Basel, Switzerland) at 37 °C for 16 minutes. Digestion was stopped with DMEM and GlutaMAX (1 mg/mL glucose), supplemented with 15% heat-inactivated FBS (all Thermo Fisher Scientific, Waltham, MA, USA). Following several washing and filtering steps, islets were isolated from exocrine tissue through gradient centrifugation at 1200× g for 25 minutes. The islets were then collected from the interphase between Histopaque-1077 and DMEM. After being washed twice with islet medium (Connaught Medical Research Laboratories medium 1066, CMRL) supplemented with 15% heat-inactivated FBS, 100 U/mL penicillin, 100 µg/mL streptomycin, 50 µM β-mercaptoethanol, 0.15% NaHCO3, and 10 mM glucose, they were ready for further use. All additional assays were conducted following an overnight culture in islet medium at 37 °C, 5% CO2, and a humidified atmosphere.
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4

Isolation of Stromal Vascular Fraction Cells

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Stromal vascular fraction (SVF) cells were isolated by a previously described methodology20 (link). Briefly, small pieces of adipose tissue (1–2 g of SAT or MAT) (avoiding blood vessels) were added to tubes containing Hanks’ balanced salt solution supplemented with 4% BSA, 10 mM HEPES and Liberase™ TL Research Grade (Roche Diagnostics, Risch-Rotkreuz, Switzerland) and incubated in a water bath up to 60 min at 37 °C, with manual shaking each 10 min. After water bath incubation, digested samples were homogenized to single-cell suspensions, passed through a 100-μm cell strainer (BD Biosciences Pharmingen, San Diego, CA) and centrifuged at 280 × g for 10 min at 4 °C. Cells at the bottom, corresponding to the SVF were resuspended in Dulbecco’s PBS, supplemented with 2% FBS (Biowest, Nuaillé, France), 2 mM EDTA and 10 mM HEPES (all from Sigma-Aldrich) for flow cytometry studies and complete RPMI medium for cell sorting experiments.
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5

Isolation of Epidermal and Dermal Cell Suspensions

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Epidermal cell suspensions were prepared as previously described with slight modifications (Nagao et al., 2009 (link)). The shaved mouse trunk skins were floated on RPMI 1640 medium containing 0.15% trypsin and 0.27 mM EDTA at 37 °C for 30 or 45 min. The epidermis was mechanically scraped off in 5% FCS-PBS and washed and filtered through cell strainers (BD Falcon). To obtain the dermal cell suspension, the dermis was minced with scissors or scalpels and incubated in RPMI 1640 medium containing 0.25 mg/ml of Liberase TL Research grade (Roche) and 200 U/ml of DNase I (Sigma) at 37 °C for 60 min. Skin-draining lymph nodes (brachial, axiliary, cervical and inguinal) and spleens were excised and disrupted through a cell strainer (BD Falcon) in 5% FCS-PBS to generate single cell suspensions.
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6

Dissociation and Cytokine Analysis of Murine Lung Tissue

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Fragments of lungs (n = 5 mice) were collected, treated with 20 U/mL of DNAse I (GE Healthcare, Illinois, USA) and 0.13 mg/mL of liberase TL Research Grade (Roche – Sigma-Aldrich) and incubated in a ThermoMixer by 1000 rpm for 45 minutes at 37 °C. Subsequently, the reaction was stopped with RPMI 1640 medium supplemented with 10% fetal bovine serum and 1.5% of a solution containing 10000 U penicillin and 10 mg streptomycin/mL, and filtered through a 70 μm cell strainer. After that, the solution containing the cells were then centrifuged. Cell resuspension was adjusted to 1×106 cells/well for flow cytometry analysis. Fragments of lungs were collected and added 1 mL of cytokines extraction solution [0.4 M NaCl, 0.05% Tween 20, 0.5% bovine serum albumin (BSA), 0.1 mM phenylmethanesulfonyl fluoride (PMSF), 0.1 mM benzethoniumchloride, 10 mM disodium ethylenediaminetetraacetic acid (EDTA) and 20 Kallikrein inhibitor (KI) aprotinin] to each 100 mg of tissue. Then, the Ultra-Turrax homogenizer-dispenser was used to homogenize solutions containing the organs. Subsequently, the samples were centrifuged at 10000 × G for 10 minutes at 4 °C. Cytokine production was evaluated in the supernatant using the Duoset ELISA kit (R&D Diagnostic) according to the manufacturer’s instructions. Two independent experiments were performed with n = 5 mice.
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7

Isolation of Lung and LRLNs in Mice

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LRLNs and lungs were aseptically removed from euthanized mice and collected into 2ml tubes containing 1ml of incomplete media (ICM): RPMI-1640, 10 mM HEPES buffer, and 10 mM penicillin/streptomycin. These tissues were then mechanically homogenized and filtered through 70-µm cell strainers (Fisherbrand) to obtain single-cell suspensions. Lung tissue was additionally digested with 20 μg of Liberase TL research-grade (Roche) and 50 units of RNase-free DNase I (Promega) for 45 min at 37°C under 5% CO2, followed by 0.5M EDTA treatment for 5 mins. Cells were then suspended in freshly made ammonium-chloride-potassium (ACK) lysis buffer for 3 mins, then washed with ICM, and resuspended in complete media (CM): ICM plus 10% fetal bovine serum (FBS), 10 mM nonessential amino acids, and 10 mM sodium pyruvate. For flow cytometry analysis, single-cell suspensions were either stimulated overnight with heat-killed RB51 (HKRB51) followed by 4 hours of 5 ng/ml phorbol myristate acetate (PMA; SIGMA-ALDRICH), 500 ng/ml ionomycin (SIGMA-ALDRICH) and 10 μg/ml brefeldin A (SIGMA-ALDRICH) before antibody (Ab) staining or stained directly.
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8

Isolation and Purification of Pancreatic Islets

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The duodenal opening of the bile duct was clamped with a hemostat, and the bile duct was cannulated and perfused with 2 ml Liberase TL Research Grade (0.3 mg/ml, Roche) in RPMI 1640 medium (Invitrogen). The perfused pancreas was removed and incubated at 37°C for 30 min, after which the digestion was stopped by adding 20 ml of cold RPMI1640 medium containing 10% serum (FISHER). Digested pancreas was further dissociated mechanically by vigorous shaking. After two washes in RPMI1640 medium, the digested tissues were filtered through a 450 μm nylon mesh and resuspended in a Histopaque 1077 (Sigma)/ RPMI1640 medium and centrifuged at 2400 RPM for 20 min. The islets were collected from the interface between the medium and Histopaque and resuspended in RPMI1640 medium containing 10% serum. Islets were washed three times and hand-picked under a light microscope. The islets were cultured overnight in RPMI1640 medium containing 10% serum for analyses.
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9

Isolation and Purification of Pancreatic Islets

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The duodenal opening of the bile duct was clamped with a hemostat, and the bile duct was cannulated and perfused with 2 ml Liberase TL Research Grade (0.3 mg/ml, Roche) in RPMI 1640 medium (Invitrogen). The perfused pancreas was removed and incubated at 37°C for 30 min, after which the digestion was stopped by adding 20 ml of cold RPMI1640 medium containing 10% serum (FISHER). Digested pancreas was further dissociated mechanically by vigorous shaking. After two washes in RPMI1640 medium, the digested tissues were filtered through a 450 μm nylon mesh and resuspended in a Histopaque 1077 (Sigma)/ RPMI1640 medium and centrifuged at 2400 RPM for 20 min. The islets were collected from the interface between the medium and Histopaque and resuspended in RPMI1640 medium containing 10% serum. Islets were washed three times and hand-picked under a light microscope. The islets were cultured overnight in RPMI1640 medium containing 10% serum for analyses.
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10

Isolation of Epidermal and Dermal Cells

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Epidermal and dermal cell suspensions were prepared as before4 (link) with slight modification. Briefly, shaved whole trunk skin was harvested from appropriate animals and, after removal of subcutaneous tissues with forceps, was floated with epidermal side up onto 10 mL of Trypsin-EDTA solution containing 5 mL of 0.25% Trypsin (Nacalai tesque) and 5 mL of 0.05% Trypsin-0.53 mM EDTA • 4Na (Nacalai tesque) at 37°C for less than 30 minutes in 10 cm dish. Epidermis and dermis were separated manually with forceps. Dermis was cut into small chips manually with scissors and further incubated in 4 mL of RPMI containing 0.03% Liberase TL Research grade (Roche Applied Science) and 200 U/mL of DNase (Wako Pure Chemical Industries) for 60 minutes at 37°C shaking with rotation at 200 rpm (Bioshaker, Taitec). Epidermal and dermal cells were then suspended in 5% FCS in PBS, washed and filtered through Cell strainer (BD Falcon).
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