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Lucifer yellow

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Lucifer Yellow is a fluorescent dye used in various biological and biochemical applications. It is a water-soluble compound that exhibits a bright yellow-green fluorescence upon excitation with ultraviolet or blue light. The dye can be used for labeling and detection purposes in applications such as cell tracking, membrane staining, and microscopy.

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64 protocols using lucifer yellow

1

Transwell Permeability Assay for S. suis

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HCMEC/D3 cells were grown until confluent on 0.4 μm pore size MilliCell® inserts in 24-well cell plates. Log-phase S. suis was incubated with hFg (20 μg/ml) for 1 h and then added to the hCMEC/D3 cell monolayers at a MOI of 100:1. At the same time, Lucifer yellow (200 μM, Invitrogen) was added to the apical chamber and incubated in transport buffer (EBM-2 medium supplemented with 10 mM HEPES and 1 mM sodium pyruvate) for 30 min. The amount of Lucifer yellow in the basolateral chamber was quantified with a spectrophotometer (Varioskan Flash, Thermo Fisher).
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2

Measuring Caco-2 Cell Monolayer Permeability

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We determined the permeability of Caco-2 cell monolayers by measuring the transepithelial passage of a fluorescent dye, lucifer yellow (Invitrogen).(13 (link)) lucifer yellow is a fluorescein dye with a molecular weight of 444. Caco-2 cells (48,000 cells/well) were harvested on cell culture inserts. Cells were washed with Hank’s Balanced Salt Solution (HBSS, Invitrogen) twice. Then, HBSS (600 µl) was added to the basolateral side chamber and HBSS containing 100 µM lucifer yellow (450 µl) was applied to the apical side chamber. Then, the cultures were placed on a shaker in a 5% CO2 incubator at 37°C to ensure adequate mixing. Samples (100 µl) of the basolateral chambers were analyzed for fluorescence using a fluorescence microplate reader (Tecan, Zurich, Switzerland) at an excitation wavelength of 485 nm and an emission wavelength of 535 nm.
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3

Evaluating Paracellular Permeability with Lucifer Yellow

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Paracellular permeability was evaluated using the fluorescent marker, Lucifer yellow (LY, Lucifer yellow CH, lithium salt, Thermo Scientific). A transport buffer composed of 1%v/v HEPES solution added to Hank’s Balanced Salt Solution (HBSS) (1×, Gibco) was added to wells of a 24-well plate and placed in a humidified incubator at 37°C, 5% CO2. The hanging cell culture inserts were then rinsed with the transport buffer and then placed in the 24-well plate with the transport buffer. LY solution (300 μM) was then added to the apical side of the inserts (0.3 ml per insert) and the plate was incubated at 37°C and 5% CO2 for 1.30 h. Samples taken from both the apical and basolateral sides of each insert were then analyzed using a Tecan Spark multimode microplate reader to record fluorescence values (excitation/emission wavelengths at 428/536 nm). A standard curve was then used to estimate the LY concentration of each sample and then apparent permeability (Papp, cm/s) was calculated using:
LYA and LYB are the concentrations of LY in the apical and basal compartments, respectively. VolA and VolB are the volumes in the apical and basal sides, respectively. T (seconds) is the time of incubation. C is the initial concentration of LY on the apical side (300 μM) and A is the area of the membrane.
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4

Cardiomyocyte Cx43 Permeability Assay

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Up take of CX43 permeable fluorescence dye Lucifer Yellow (LY) (Molecular Probes) was performed as described previously [13] (link). Briefly, cardiomyocytes were incubated with 1 mM Lucifer Yellow (LY) (Molecular Probes) for 30 min. The fluorescence of LY was determined by fluorescence microscopy (B-3A filter, TE2000-E, NIKON, Tokyo, Japan) following removal of incorporated LY and rinse with PBS. The signal intensity was quantified in 10 randomly selected fields (10×20) using NIS-Elements 3.0 software (NIKON, Tokyo, Japan). The non-specific binding of LY was determined in the presence of a connexin hemichannel blocker, 50 mM of Lanthanum (Sigma-Aldrich).
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5

Retinal Immunolabeling Protocol

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The retinas were fixed for 15 min in 4% paraformaldehyde in mACSF. The retinas were first incubated in blocking solutions containing 5% normal donkey serum for 2 h under room temperature. Then, they were incubated in primary antibodies for three nights and secondary antibodies overnight at 4oC. Primary antibodies used in this study were: CtBP2 (1:1000, mouse, BD Biosciences), PSD95 (1:500, mouse, Abcam), and Lucifer Yellow (1:1000, rabbit, Invitrogen). Secondary antibodies were anti-isotypic DyLight (1:1000, Jackson ImmunoResearch) or Alexa conjugates (1:1000, Invitrogen).
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6

Heptanol Inhibits Gap Junction Diffusion

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Rats were treated with heptanol (0.1 mg/kg) or its solvent DMSO intraperitoneally 1 h before AOLT. The dose in rats was chosen based on literature22 (link) that heptanol at 0.1 mg/kg could effectively inhibit Cx43, and our preliminary study showed that it did not induce liver injury or change Cx43 expression in livers or kidneys at this dose (Supplementary Fig. 3). One hour later, kidneys were excised and freshly sliced and processed as described47 (link). We used a 27-gauge needle dipping into a solution containing 0.5% Lucifer Yellow (Invitrogen) and 0.5% Rhodamine (Invitrogen). Lucifer Yellow could be transferred through GJs, and in contrast Rhodamine is impermeable. The needle was used to mechanically penetrate a small area of each slice to apply dyes. After 5 min of incubation, kidney slices were rinsed in saline, fixed in 4% paraformaldehyde for 30 min, frozen in OCT compound, and cyro-sectioned into 10-µm sections. The slices were then rinsed in saline again, and mounted and imaged by fluorescence microscopy. Quantitative analysis of the distance of dye spread was performed between the front of dye transfer and the scrape line.
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7

Morphological Analysis of Retinal Ganglion Cells

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RGCs were targeted for morphological analysis using an electrode containing internal solution with the addition of 2% Lucifer yellow (LY; Invitrogen). Cells were whole-cell voltage-clamped to record the functional response properties; during the recording, LY was diffused into the cell. The retina was then removed from Ames’ media and fixed in 4% paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) for 45 min. Retinas were then washed in 0.1 M phosphate buffer for 25 min before being placed in 3% agarose (Sigma-Aldrich). agarose blocks containing the retina were oriented vertically on a PELCO easiSlicer (Ted Pella) and sliced at 200 µm width. The sliced retina was plated and imaged on an epifluorescence microscope (Olympus, BX43). The inner and outer boundaries of the inner plexiform layer (IPL) were determined by the ganglion cell layer and the inner nuclear layer (Fig. 2). Cells were classified as ON, OFF, or ON/OFF based on dendrite depth within the IPL. The top boundary was denoted as 0% depth, and the bottom boundary was 100% depth; based on prior methods from Margolis and Detwiler (2007) (link), we used 50% as the ON/OFF subliminal boundary. Dendritic arbors were traced using NeuronJ (ImageJ, National Institutes of Health).
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8

Detailed Reagents Preparation Protocol

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ATP, carbenoxolone and ethidium bromide were from Sigma-Aldrich (St. Louis, MO, USA). Probenecid (water-soluble) and lucifer yellow were from Invitrogen (Carlsbad, CA, USA). AZ11645373, carbenoxolone, AZ10606120, 10Panx1 and scrambled peptides were from Tocris Biosciences (Bristol, UK). ethidium bromide (5 mM) and lucifer yellow (1.6 mg/ml) were prepared in distilled water and stored at 4°C, Probenecid (250 mM) was prepared in distilled water and stored at −30°C. AZ11645373 (50 mM) and AZ10606120 (10 mM) were prepared in DMSO and stocks frozen at −30°C. carbenoxolone (50 mM) was prepared fresh before each experiment in distilled water or saline buffer. 10Panx1 and scrambled peptides (1 mM) were prepared in DMSO and stored at −80°C.
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9

Dye Transfer Experiments on HeLa Cells

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Dye transfer experiments on HeLa cells were performed as previously described [37 (link)]. In short, HeLa cells were cultured in 35-mm dishes until confluence. Microelectrodes were pulled from borosilicate glass capillaries (WPI) using a pc-10 electrode puller (Narishige). The electrode was backfilled with 4% Lucifer Yellow (Invitrogen) dissolved in 150 mM LiCl buffered to pH 7.2. Subsequently, the electrode was introduced into one HeLa cell and the dye was allowed to diffuse for 3 min or for 5 min in a separate set of experiments. Fluorescent cells were immediately counted using an inverted TMD-300 microscope (Nikon) equipped with a 40x phase 3 dark medium objective with numerical aperture of 0.7 (Zeiss) and a Lucifer Yellow filter (Zeiss).
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10

Microinjection of Daphnia magna Eggs

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Following the established protocol for microinjection [5 (link)], eggs were obtained from 2–3 week old D. magna right after ovulation and were transferred to ice-chilled M4 medium [22 (link)] with 80 mM sucrose. An injection marker, 1 mM Lucifer Yellow (Invitrogen, Carlsbad CA, USA), was mixed into the injection cocktail (plasmids, RNAs, and proteins) for each experiment. After injection, the surviving eggs were transferred into each well of 96-well plates which had 100 μL of M4-sucrose medium and were then kept in an incubator at 23°C.
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