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20 protocols using affinipure goat anti mouse igg h l

1

Western Blot Analysis of PTPRU

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Western blot analysis was performed according to standard procedures as previously described31 (link). The following primary antibodies were used: anti-PTPRU mAb (1:1000; R&D Systems®, MAB7475), anti-P-Tyr-102 mAb (1:2000; CST, 9416S), and anti-β-actin mAb (1:2000; Santa Cruz, sc-47778). The following secondary antibodies were used: peroxidase-conjugated Affinipure goat anti-mouse IgG (H+L) (1:3000; Proteintech, SA00001-1) and peroxidase-conjugated Affinipure goat anti-rabbit IgG (H+L) (1:3000; Proteintech, SA00001-2).
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2

Western Blot Analysis of Protein Expression

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Whole-cell extracts were extracted by directly lysing the cells with 1× radioimmunoprecipitation assay buffer (Beyotime) with 1 mM PMSF (Beyotime) added immediately before use. Samples were boiled by adding 6× SDS sample buffer for 10 min at 100 °C and resolved using SDS-polyacrylamide gel electrophoresis. The proteins were probed with the following antibodies: monoclonal anti-GFP (1:2000 dilution; Thermo Fisher Scientific), anti-βACTIN (1:2000 dilution; Thermo Fisher Scientific), and anti-METTL3 (1:1000 dilution; Abcam), and anti-FTO (1:2000 dilution; Abcam). Immunodetection was performed using horseradish peroxidase–conjugated Affinipure goat anti-mouse IgG (H + L) (1:5000 dilution; catalog no.: SA0 001-1; Proteintech) or horseradish peroxidase–conjugated Affinipure goat anti-Rabbit IgG (H + L) (1:5000 dilution; catalog no.: SA00001-2; Proteintech) and ECL prime substrate (Bio-Rad) according to the manufacturer's instructions.
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3

Western Blot Protein Analysis Protocol

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For western‐blotting, HeLa cells were plated in 12‐well plates and transfected with 1 µg plasmid. After 48 h transfection, cells were washed with PBS and lysed in 50 µL 1 × SDS loading buffer (50 mm Tris‐HCl pH 6.8, 10% glycerol, 2% SDS, 0.1% bromophenol blue, 1% beta‐mercaptoethanol) at room temperature for 10 min. The cell lysate was collected and then boiled at 95 °C for 10 min. The appropriate amount of protein was loaded onto SDS PAGE gels. The separated proteins were transferred onto a PVDF membrane (Millipore) in an ice‐bath for 2 h. Then the PVDF membrane was blocked in 5% (w/v) BSA (Beijing Dingguo changsheng Biotechnology Co.,Ltd, FA016) in TBST (Tris‐buffered saline, 0.1% Tween 20) at room temperature for 1 h. The blot of protein was stained as indicate for at least 12 h at 4 °C. The blot was washed four times with TBST at room temperature for 5 min each, then stained with 1:5000 HRP‐conjugated Affinipure Goat Anti‐Rabbit IgG(H+L) (Proteintech, SA00001‐2) or HRP‐conjugated Affinipure Goat Anti‐Mouse IgG(H+L) (Proteintech, SA00001‐1) in 5% BSA (w/v) in TBST for 1 h at room temperature. The blots were washed four times with TBST at room temperature for 5 min each time and imaged on Molecular Imager ChemiDocTM XRS+ Imaging System (Bio‐Rad) after incubation with Rhea ECL (US Everbright, Inc).
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4

Recombinant Vimentin Protein Expression and Purification

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The verified recombinant plasmid was transformed into E. coli BL21(DE3) competent cells (Tiangen) and cultured in a shaker of 37 °C and 180 rpm. When the OD600 reached about 0.6, IPTG was added (final concentration 1 mmol/l; Sigma-Aldrich, St. Louis, MO, USA) to induce and express recombinant vimentin protein. The cell pellet was collected by centrifugation and lysed with sonication at 4 °C. Then the lysed product was analyzed by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) to confirm that the recombinant protein was present as a soluble protein or in inclusion bodies. The recombinant protein was purified according to the characteristics using a published gel purification method [18 (link)]. Purified recombinant vimentin protein (10 μg) was analyzed by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The PVDF membrane was blocked in 5% skim milk for 2 h at 37 °C and incubated with Anti-GST Tag Mouse Monoclonal Antibody (1:2000; CWBio, Beijing, China) for 2 h at 37 °C, and was then washed in phosphate-buffered saline (PBS) three times for 5 min and incubated with peroxidase-conjugated AffiniPure Goat Anti-Mouse IgG (H+L) (1:5000; Proteintech, Chicago, IL, USA) for 45 min at room temperature. Finally, imaging was obtained using the ChemiDoc Touch Imaging System (Bio-Rad, Hercules, CA, USA).
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5

Visualizing Autophagy and Mitochondria Dynamics

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Cells were fixed with 4% paraformaldehyde in PBS for 8 min at room temperature, washed three times with 1X PBS and then blocked with 10% serum and 0.3% Triton X-100 in PBS for 1 h at room temperature. Cells were again washed three times with 1X PBS and incubated a 1:200 dilution of rabbit polyclonal antibody against LC3B (Cat# ab63817, Abcam) in PBS containing 0.1% Triton X-100 and 5% horse serum and overnight at 4 °C. After washing, the cells were incubated with fluorescein (FITC)-conjugated AffiniPure goat anti-mouse IgG (H + L) (Cat# SA00003-1, Proteintech) for 2 h at room temperature. Samples were mounted with Immu-mount (Thermo Scientific).
Cells were stained with 50 nM MitoTracker® Red CMXRos (Cat# 9082S, Cell Signaling Technology) for 30 min at 37 °C, washed with 1X PBS, and then used to detect the colocalization of LC3 and MitoTracker.
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6

Immunoblotting Analysis of Innate Immune Receptors

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The cells were placed in cold RIPA solution (Solarbio, C0065) with PMSF (Solarbio, P0100) after washing the cells twice with phosphate buffer. Subsequently, they were pyrolysed with a protease inhibitor mixture for 30 min. The supernatant was centrifuged and harvested to analyse the protein concentration using the BCA Protein Assay Kit (BestBio, A045-4). Immunoblotting was conducted using the SDS-PAGE electrophoresis system. Briefly, 25 μL of sample was loaded and electrophoresed on a 10% SDS reducing gel. Blots were blotted onto a polyvinylidene fluoride membrane and incubated with primary antibodies against TLR3 (1 : 1000, Abcam, ab13915, USA), TLR4 (1 : 500, Abcam, ab13556), TLR6 (1 : 1000, Proteintech, 22240-1-AP), IDO1 (1 : 500, Abcam, ab55305), and NF-κB (1 : 500, Abcam, ab14059) overnight at 4°C. On the following day, the blot was washed three times with TBST and incubated with horseradish peroxidase-conjugated (HRP-conjugated) AffiniPure Goat anti-Mouse IgG (H+L) (1 : 5000, Proteintech, SA00001-1, USA) or HRP-conjugated AffiniPure Goat anti-Rabbit IgG (H+L) (1 : 5000, Proteintech, SA00001-2). Further, the blot was kept at 25°C for 1 h in TBST. Finally, proteins on the washed membrane were visualised using the TBST (Solarbio, T1082).
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7

Bladder Cancer Cell Lines for MIBC Research

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Two human urinary bladder cancer cell lines (T24 and UM-UC-3) that isolated from high-grade and late-stage tumors were used as MIBC models in this study [16 (link)]. T24 and UM-UC-3 were cultured in Dulbecco's Modified Eagle Medium (GIBCO-Invitrogen) containing 10% fetal bovine serum (ExCell Bio).The following antibodies were used in our study: Actin (Santa Cruz Biotechnology, sc-1616,1:1000), ZBTB7A (Santa Cruz Biotechnology, SC-33683, 1:1000), and HIC1 (Proteintech, 24949-1-AP, 1:1000), Mouse anti-Armenian hamster IgG-HRP (Santa Cruz Biotechnology, sc-2789, 1:2000) for ZBTB7A, HRP-conjugated Affinipure Goat Anti-Rabbit IgG(H + L) (Proteintech, SA00001-2, 1:10000) for HIC1, HRP-conjugated Affinipure Goat Anti-Mouse IgG(H + L) (Proteintech, SA00001-1, 1:10000) for Actin. The primary antibodies were incubated for two hours at room temperature, while the secondary antibodies were incubated for one hour.
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8

Western Blot Analysis of HPV18 E7 Protein

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Cells were lysed in RIPA lysis buffer (Beyotime, P0013B) and PMSF (Beyotime, ST506). Cell lysis was carried-out for 30 min on ice, lysates were then centrifuged to remove insoluble material. Then, the loading buffer (Beyotime, P0015) was added to the lysates and heated at 100 °C for 3–5 min to denature the protein completely. Samples were separated on 12% SDS-PAGE Gel (Beyotime, P0053A), transferred to PVDF membranes, and detected with the indicated antibodies. The following antibodies were used for western blotting: anti-HPV18 E7 antibody (8E2, abcam, ab100953, dilution: 1:1000), anti-β-actin antibody (2D4H5, proteintech, 66009-1-Ig, dilution: 1:5000), HRP-conjugated Affinipure Goat Anti-Mouse IgG(H + L) (proteintech, SA00001-1, dilution: 1:2000).
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9

Protein Extraction and Analysis from Colon Tissue

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The RIPA buffer (1% Nonidet P40, 0.1% SDS, 0.5% deoxycholate, 50mM Tris (PH7.4) Protease Inhibitor Cocktail) for was used to extract proteins from colon tissue 15 mins. BSA standards were used to produce protein quantitative standard curves. The protein sample was placed in a boiling water bath for 6-10 mins for denaturation. 6%-8% SDS-PAGE gel was configured for protein electrophoresis. Then, membrane was rotated and immersed in the sealing liquid, and it was slowly sealed with a shaking table at room temperature for 1-2 h. Then the protein was transferred to PVDF membrane. The membrane was then cleaned twice by TBST. The membrane was incubated with diluted primary antibody and shaken overnight at 4° C. The first antibodies used were as follows: GAPDH (#60004-1-Ig, 1:8000, Proteintech, China), SRC (ab133283, 1:1000, Abcam, UK), P-SRC (#D7F2Q, 1:1000, Cell Signaling, USA), MAPK (#11257-1-AP, 1:2000, Proteintech), P-MAPK (#80031-1-RR, 1:10000, Proteintech), AKT1 (#60203-2-Ig, 1:10000, Proteintech) and P-AKT1 (#66444-1-Ig, 1:10000, Proteintech). The corresponding secondary antibody HRP-conjugated Affinipure Goat Anti-Mouse IgG (H+L) (#SA00001-1, Proteintech) was successively added and incubated in a shaking table for 1-2 h in dark at room temperature. The developer solution was added and then placed in a BIO-RAD for visualization.
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10

Western Blot Analysis of PKA/CREB Signaling

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Cells were rinsed twice with PBS, lysed in RIPA lysis buffer (Beyotime, China, CAT#P0013B) supplemented with a protease inhibitor (PMSF, Beyotime, China, CAT#ST506) and Phosphatase inhibitor cocktail A (Beyotime, China, CAT#P1082), and protein concentration was measured using the BCA reagent (Beyotime, China, CAT#P0012). Electrophoresis was conducted by 10% SDS-polyacrylamide gel and transferred proteins to PVDF membranes (Millipore, Cat# IPVH00010). The following primary antibodies were used for incubation overnight at 4 °C: 1:10,000 mouse anti-beta-Tubulin (Proteintech, China Cat#66240-1-Ig), 1:1000 rabbit anti-PKA (Cell Signaling, USA Cat#5842 T), 1:5000 rabbit anti-pCREB (Abcam, UK Cat# ab32096), and 1:1000 rabbit anti-CREB (Abcam, UK Cat# ab32515). All membranes were incubated with HRP-conjugated Affinipure Goat Anti-Mouse IgG (H+L) (Proteintech, China Cat#SA00001-1) or HRP-conjugated Affinipure Goat Anti-Rabbit IgG (H+L) (Proteintech, China Cat#SA00001-2) for 1 h. Immunoreactive bands were detected using an enhanced chemiluminescence (ECL) kit (Advansta, USA Cat#K-12045-D10) and quantified with a gel-image analyzing system (Fusion Optix, USA).
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