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Foxp3 fixation permeabilization concentrate and diluent

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Foxp3 Fixation/Permeabilization Concentrate and Diluent is a laboratory reagent designed for the intracellular staining of Foxp3 in flow cytometry applications. The concentrate and diluent provide the necessary components for the fixation and permeabilization of cells, allowing for the detection of the Foxp3 transcription factor, which is a critical marker for regulatory T cells.

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14 protocols using foxp3 fixation permeabilization concentrate and diluent

1

Intestinal Mononuclear Cell Isolation

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Cells from the cLP were prepared by cutting the large intestine into 1-cm long pieces, and then stirred for 20 min at 37°C in PBS containing 5 mM EDTA and 5 mM EGTA to dissociate epithelial and intraepithelial cells. After washing with PBS three times, the remaining tissue was treated for 50 min at 37°C with RPMI containing 2 mg/mL collagenase D (Roche) and 1 mg/mL DNase I (Roche). Mononuclear cells were isolated using a discontinuous Percoll gradient (40% and 75%) and subjected to flow cytometry (FACScantoII, BD Biosciences). Following stimulation with PMA (20 ng/mL) and ionomycin (1μM) in the presence of monensin for 4h, intracellular staining of the cells was performed using Foxp3 Fixation/Permeabilization Concentrate and Diluent (eBioscience) according to the manufacturer’s instructions.
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2

Multiparametric Phenotyping of Immune Cells

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Following preparation of single-cell suspensions, cells were plated at 1 × 106 cells/well and stained for surface markers for 15 min on ice. For tetramer staining, cells were stained with the WNV NS4b-H2Db tetramer (generated by the Immune Monitoring Lab, Fred Hutchinson Cancer Research Center). Cells were subsequently fixed, permeabilized (Foxp3 fixation/permeabilization concentrate and diluent; eBioscience), and stained intracellularly with antibodies for 30 min on ice. Flow cytometry was performed on a BD LSRII machine and with BD FACSDiva software. Analysis was performed using FlowJo software.
The following directly conjugated antibodies were used: CD3-ECD (143-2C11), CD4-BV605 (RM4-5), CD8-BV650 (53-6.7), Foxp3-Alexa700 (FJK-16S), and NS4b class I tetramer-allophycocyanin. The Foxp3 intracellular staining kit (eBioscience) was used for fixation/permeabilization and all intracellular staining. AmCyan Live/Dead stain (Invitrogen) was used in all panels for identification of live cells.
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3

Multiparameter Flow Cytometry of Antigen-Specific T Cells

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Following preparation of single cell suspensions, cells were plated at 1 x 106 cells/well and stained for surface markers for 15 minutes on ice. For tetramer staining, cells were stained with the WNV NS4b-H2Db tetramer (generated by the Immune Monitoring Lab, Fred Hutchinson Cancer Research Center). Cells were subsequently fixed, permeabilized (Foxp3 Fixation/Permeabilization Concentrate and Diluent, Ebioscience) and stained intracellularly with antibodies for 30 minutes on ice. Flow cytometry was performed on a BD LSRII machine using BD FACSDiva software. Analysis was performed using FlowJo software. The following directly conjugated antibodies were used: CD3-ECD (143-2C11), CD4-BV605 (RM4-5), CD8-BV650 (53–6.7), Foxp3-Alexa700 (FJK-16S), NS4b class I tetramer-APC, CD44-FITC (IM7), CD73-BV421 (TY/11.8), CTLA-4-APC (UC10-4B9), ICOS-PECy5 (7E.17G9), CXCR3-PerCP eFlour710 (CXCR3-173), GITR-PECy7 (DTA-1), CD29-APC Cy7 (HMb1-1), CCR5-PE (HM-CCR5), Ki67-FITC (SolA15), KLRG-1-PECy7 (2F1), and CD127-PECy5 (A7R34). AmCyan Live/dead stain (Invitrogen) was used in all panels for identification of live cells. Flow cytometry heatmaps were created with the pheatmap package (http://CRAN.R-project.org/package=pheatmap) in the R statistical computing environment (http://www.R-project.org/). The values plotted are z-scores of the counts for each cell population.
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4

Multiparameter Immunophenotyping of T-cells

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Following preparation of single cell suspensions, cells were plated at 1 x 106 cells/well and stained for surface markers for 15 minutes on ice. Cells were subsequently fixed, permeabilized (Foxp3 Fixation/Permeabilization Concentrate and Diluent, Ebioscience) and stained intracellularly with antibodies for 30 minutes on ice. Flow cytometry was performed on a BD LSRII machine using BD FACSDiva software. Analysis was performed using FlowJo software. The following directly conjugated antibodies were used: CD3-ECD (145-2C11), CD4-BV605 (RM4-5), CD8-BV650 (53-6.7), Foxp3-Alexa700 (FJK-16S), CD44-FITC (IM7), CD62L-Alexa700 (MEL-14), IFNg-PerCP eFluor710 (XMG1.2), IL-17-FITC (TC11-18H10.1), Tbet-PECy7 (4B10), CD73-BV421 (TY/11.8), CTLA-4-APC (UC10-4B9), ICOS-PECy5 (7E.17G9), CD29-APC Cy7 (HMb1-1), CXCR3-PerCP eFluor710 (CXCR3-173), and Ki67-FITC (SolA15). AmCyan Live/dead stain (Invitrogen) was used in all panels for identification of live cells. Gating schemes and trees used for flow cytometry analysis are shown in Supplementary Figure 1. To measure the amount of phenotypic variation attributable to genetic differences, intraclass correlation (ICC) values were calculated for all flow measures (Gelman and Hill, 2007 ).
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5

Flow Cytometry Analysis of Immune Cell Phenotypes

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Following preparation of single-cell suspensions, cells were plated at 1 × 106 cells/well and stained for surface markers for 15 min on ice. Cells were subsequently fixed, permeabilized (Foxp3 fixation/permeabilization concentrate and diluent, eBioscience) and stained intracellularly with antibodies for 30 min on ice. Flow cytometry was performed on a BD LSRII machine using BD FACSDiva software. Analysis was performed using FlowJo software. The following directly conjugated antibodies were used: CD3-ECD (145-2C11), CD4-BV605 (RM4-5), CD8-BV650 (53-6.7), Foxp3-Alexa 700 (FJK-16S), CD44-FITC (IM7), CD62L-Alexa 700 (MEL-14), IFNγ-PerCP eFluor710 (XMG1.2), IL-17-fluorescein isothiocyanate (FITC) (TC11-18H10.1), Tbet-PECy7 (4B10), CD73-BV421 (TY/11.8), CTLA-4-antigen presenting cell (APC) (UC10-4B9), ICOS-PECy5 (7E.17G9), CD29-APC Cy7 (HMb1-1), CXCR3-PerCP eFluor710 (CXCR3-173), and Ki67-FITC (SolA15). AmCyan live/dead stain (Invitrogen) was used in all panels for identification of live cells. Gating schemes and trees used for flow cytometry analysis are shown in Figure S1. To measure the amount of phenotypic variation attributable to genetic differences, ICC values were calculated for all flow measures (Gelman and Hill, 2007 ).
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6

Flow Cytometric Analysis of Intestinal Lymphocytes

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Cells isolated from mLNs, colon LP and SI LP were divided into two groups for intracellular staining: (1) anti-IL17A + anti-RORγt; and (2) anti-FoxP3. Cells of the first group were stimulated for 4–5 h at 37 °C with PMA (50 ng/ml), ionomycin (750 ng/ml; both from Sigma-Aldrich), in the presence of 10 μg/ml of Brefeldin A (BD Biosciences, San Jose, CA, USA), to activate IL17A expression. After this period, all cells were washed with PBS solution and were stained for cell viability with Fixable Viability Dye eFluor® 780 (1:1000; eBiosciences, San Diego, CA, USA) for 30 min at RT. Cells were then stained with the following extracellular antibodies: anti-TCRb-PerCP-Cy5.5 (1:100; H57-597 clone; eBioscience) and anti-CD4 + -Pacific Blue (1:200, RM4-5 close, BD Biosciences) for 30 min at 4 °C. Cells were fixed and permeabilized with FoxP3 Fixation/Permeabilization Concentrate and Diluent (eBioscience) according to manufacturer’s instructions and were stained for 90 min at 4 °C, with the following intracellular antibodies: anti-IL17A-APC (1:100; TC11-18H10.1 clone, Biolegend, San Diego, CA, USA) and anti-RORγt-PE (1:100; AFKJS-9 clone; eBioscience); or anti-FoxP3-FITC (1:100; FJK-16s clone; eBioscience). The data was acquired on LSR II cytometer (BD Bioscience) and was analyzed with FlowJo software (10.2 version) (TreeStar, Ashland, OR, USA).
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7

Comprehensive T Cell Immunophenotyping

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T cells were interrogated with allophycocyanin (APC)–conjugated anti-CD25 (PC61.5), eFluor 450-conjugated anti-CD73 (eBioTY/11.8), PE-Cy7–conjugated anti-FR4 (eBio12A5), Alexa Fluor 700–conjugated anti-CD44 (IM7), PerCP-Cy5.5-conjugated anti-CD45.1 (A20), V500–conjugated anti-CD4 (RM4-5) (eBiosciences). T cells suspensions were also stained with APC–eFluor780–conjugated anti-B220 (RA3-6B2), -CD11b (MI-70), -CD11c (N418) (all eBiosciences), and -F4/80 (BM8; Invitrogen, Carlsbad, CA), for use as dump channel reagents. Stained T cells were then treated with Foxp3 Fixation/Permeabilization Concentrate and Diluent and stained with APC–conjugated anti-Foxp3 (FJK-16s) (eBioscience). In some experiments cells were also stained with Pacific Blue–conjugated T-bet (BioLegend, San Diego, CA) following fixation/permeabilization.
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8

Comprehensive T Cell Immunophenotyping

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T cells were interrogated with allophycocyanin (APC)–conjugated anti-CD25 (PC61.5), eFluor 450-conjugated anti-CD73 (eBioTY/11.8), PE-Cy7–conjugated anti-FR4 (eBio12A5), Alexa Fluor 700–conjugated anti-CD44 (IM7), PerCP-Cy5.5-conjugated anti-CD45.1 (A20), V500–conjugated anti-CD4 (RM4-5) (eBiosciences). T cells suspensions were also stained with APC–eFluor780–conjugated anti-B220 (RA3-6B2), -CD11b (MI-70), -CD11c (N418) (all eBiosciences), and -F4/80 (BM8; Invitrogen, Carlsbad, CA), for use as dump channel reagents. Stained T cells were then treated with Foxp3 Fixation/Permeabilization Concentrate and Diluent and stained with APC–conjugated anti-Foxp3 (FJK-16s) (eBioscience). In some experiments cells were also stained with Pacific Blue–conjugated T-bet (BioLegend, San Diego, CA) following fixation/permeabilization.
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9

Multiparametric Cell Staining Workflow

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Splenocytes were pre-incubated with Fc-block (BD Pharmingen) and stained with anti- CD8α, CD4 and TCRβ antibodies. For immunodetection of HDAC1 and HDAC2, cells were fixed and permeabilized using Foxp3 Fixation/Permeabilization Concentrate and Diluent (eBioscience) according to the manufacturer’s instruction. Subsequently, cells were blocked in 5% normal goat serum and then incubated with rabbit anti-mouse HDAC1 and mouse anti-mouse HDAC2 antibodies in permeabilization buffer (eBioscience) for 1 hour. Cells were washed with permeabilization buffer and incubated with Alexa Fluor 488-conjugated goat anti-rabbit IgG1 and biotinylated anti-mouse IgG1 antibodies, followed by a Streptavidin secondary staining.
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10

Lymphocyte Immunophenotyping by Flow Cytometry

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For flow cytometric analyses, 1.0x106 maternal lymph node and uterus cells and 0.5x106 PBMCs were used for immuno-phenotyping. Non-specific binding was blocked by rat anti-mouse CD16/CD32 Mouse Fragment crystallizable (Fc) Block (1:200, BD Bioscience) and Normal Rat Serum (1:100, eBioscience) for 15 min at 4°C. Subsequently, the cells were incubated with the respective antibodies for 30 min for surface and intracellular staining. Antibodies are summarized in Table 1. In order to identify dead cells, cells were simultaneously stained with eFluor 506 viability dye (eBioscience). For intracellular staining, cells were fixed and permeabilized using Foxp3 Fixation/Permeabilization Concentrate and Diluent (eBioscience) according to the manufacturer’s instructions.
In order to quantify the expression of the GR by flow cytometry, 2x106 cells were first incubated with 10-6 M progesterone or corticosterone or only medium for 15 minutes, respectively. Subsequently, samples were blocked and stained with the respective surface markers for 30 minutes. Afterwards, cells were fixed and permeabilized as stated above and intracellularly stained with an anti-GR antibody directly labelled with AF488 for 30 minutes.
Flow cytometric data were acquired using a BD LSRFortessa II (BD Biosciences) and analyzed using FlowJo (Tree Star, Ashland, OR, USA).
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